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Series GSE21972

Query DataSets for GSE21972

Status

Public on Jul 07, 2010

Title

Mock or KSHV cells (BJABJ, BCBL, TIME and HUVEC) vs common reference (mixture of RNA from both infected and uninfected cells)

Platform organisms

Homo sapiens; Human herpesvirus 8 type M

Sample organism

Homo sapiens

Experiment type

Expression profiling by genome tiling array

Summary

Expression profiling of latently infected cells using a custom tiling microarray
HUVEC and TIME cells were infected BCBL-1-derived KSHV. Mock infected HUVEC and TIME cells served as controls for each of these two stably infected cells, respectively. BJAB cells served as uninfected controls for the BCBL-1 cells. KSHV-infected cells are induced to enter lytic cycle with valproate or Adenovirus-RTA. Cells were harvested at indicated time points and analyzed.

Overall design

Three condition experiment: mock infected, latently infected cells and lytically infected. Three cell types (BJAB cells served as uninfected controls for the BCBL-1 cells).

Contributor(s)

Chandriani S, Ganem D, Xu Y

Citation(s)

20534856

Submission date

May 24, 2010

Last update date

Mar 22, 2012

Contact name

Sanjay Chandriani

E-mail(s)

[email protected]

Organization name

UCSF

Street address

513 Parnassus Avenue

City

San Francisco

State/province

ZIP/Postal code

94143

Country

USA

Platforms (1)

GPL10083

KSHV tiling microarray AMADID: 017577

Samples (20)

More...

GSM546320	HUVEC replicate 1 (P-type strain study)
GSM546321	HUVEC replicate 2 (P-type strain study)
GSM546322	HUVEC +KSHV, 14 h.p.i. (P-type strain study)

Relations

BioProject

PRJNA126789

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE21972_RAW.tar	276.6 Mb	(http)(custom)	TAR (of TXT)
Processed data included within Sample table