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Series GSE221248 Query DataSets for GSE221248
Status Public on May 16, 2023
Title Bovine blastocyst like structures derived from stem cell cultures
Organism Bos taurus
Experiment type Expression profiling by high throughput sequencing
Summary Understanding blastocyst formation and implantation is critical for improving farm animal reproduction but is hampered by a limited supply of embryos. We developed an efficient method to generate bovine blastocyst-like structures (termed blastoids) via the assembly of trophoblast stem cells and expanded potential stem cells. Bovine blastoids resemble blastocysts in morphology, cell composition, single-cell transcriptomes, and represent an accessible in vitro model for studying bovine embryogenesis.
 
Overall design Bovine trophoblast stem cells (TSCs) and bovine and extended pluripotent stem cells (EPSCs), were aggregated in tFACL+PD and collected at day 4.Single-cell RNA-Seq was performed using the 10x Genomics Chromium Chip and sequenced by Illumina NextSeq 500/550 sequencing systems.
Web link https://www.cell.com/cell-stem-cell/fulltext/S1934-5909(23)00121-2
 
Contributor(s) Pinzón-Arteaga CA, Wang Y, Wei Y, Ribeiro Orsi AE
Citation(s) 37146582
Submission date Dec 18, 2022
Last update date May 19, 2023
Contact name Carlos Pinzon
E-mail(s) [email protected], [email protected], [email protected]
Phone +1 3057132571
Organization name UT Southwestern Medical Center
Department Molecular Biology
Lab Jun Wu Lab
Street address 5323 Harry Hines Boulevard, NA5.124
City Dallas
State/province Texas
ZIP/Postal code 75390-9148
Country USA
 
Platforms (1)
GPL26012 Illumina NovaSeq 6000 (Bos taurus)
Samples (1)
GSM6856833 Bovine assembled blastoids day 4
Relations
BioProject PRJNA913592

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE221248_RAW.tar 13.0 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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