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| Status |
Public on May 01, 2024 |
| Title |
Long-read nanopore sequencing (Nanopore-seq) of PQBP1 knockdown in ovarian cancer cells |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
To investigate the comprehensive function of PQBP1 in the regulation of RNA splicing, we established Dox-inducible PQBP1 knockdown HEY cell line.
We then performed transcript expression profiling analysis using data obtained from long-read nanopore-seq of PQBP1 knockdown and control HEY cells (three biological replications of each sample).
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| Overall design |
Comparative transcript expression profiling analysis of Nanopore-seq data for Dox-inducible PQBP1 knockdown HEY cells (shNC, shPQBP1). The assay was performed on three biological triplicates.
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| Contributor(s) |
Liu X, Liu Z |
| Citation(s) |
38342602 |
| |
| Submission date |
Jan 17, 2023 |
| Last update date |
May 01, 2024 |
| Contact name |
Xihan Liu |
| E-mail(s) |
[email protected]
|
| Phone |
15106917320
|
| Organization name |
Shandong University
|
| Street address |
Wenhuaxi Road #44
|
| City |
Jinan |
| State/province |
Shandong |
| ZIP/Postal code |
250012 |
| Country |
China |
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| Platforms (1) |
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| Samples (6)
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| Relations |
| BioProject |
PRJNA924816 |
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