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Series GSE228840 Query DataSets for GSE228840
Status Public on Mar 04, 2024
Title COVID-19 vaccination is associated with attenuation of inflammatory responses during breakthrough disease [long-read RNA-Seq]
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary A subset of individualsenrolledina randomised controlled trial ofChAdOx1 nCoV-19 and received either ChAdOx1 COVID-19 or control MenACWY vaccine whoexperienced COVID-19-associated symptoms were evaluated using multi-omictechnologies. Participants were selected to represent symptomatic individuals with and without COVID-19 as determined by a nucleic acid amplification test (NAAT).
 
Overall design Blood samples taken on theday of vaccination were compared with samples taken at onset of COVID-19 associated symptoms.Long-read Nanopore PCR-cDNA sequencing technology was utilised.
 
Contributor(s) Chelysheva I, Drury R, O'Connor D, Camara S
Citation(s) 38649734
Submission date Apr 03, 2023
Last update date May 17, 2024
Contact name Irina Chelysheva
E-mail(s) [email protected]
Organization name University of Oxford
Department NDM
Lab Centre for Human Genetics
Street address Roosevelt Dr
City Oxford
ZIP/Postal code OX3 7BN
Country United Kingdom
 
Platforms (1)
GPL26167 PromethION (Homo sapiens)
Samples (39)
GSM7140100 sample01_D0_ChAdOx1_+ve
GSM7140101 sample02_CT_ChAdOx1_+ve
GSM7140102 sample03_D0_MenACWY_+ve
This SubSeries is part of SuperSeries:
GSE228842 COVID-19 vaccination is associated with attenuation of inflammatory responses during breakthrough disease
Relations
BioProject PRJNA951717

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE228840_ONT_transcript_counts_cpm.txt.gz 6.2 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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