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Series GSE229120 Query DataSets for GSE229120
Status Public on May 30, 2023
Title A unique mode of cross regulation in a cell envelope stress signaling system [ChIP-seq]
Organism Brucella ovis
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary A multi-layered structure known as the cell envelope separates the controlled interior of Gram-negative bacteria from a fluctuating physical and chemical environment. Transcription of genes that determine cell envelope structure and function is commonly controlled by a class of environmental regulators known as two-component signal transduction systems (TCS), which are comprised of 1) sensor histidine kinases and 2) response regulators. To discover TCS genes that contribute to cell envelope function in the intracellular mammalian pathogen, Brucella ovis, we subjected a comprehensive collection of non-essential TCS mutants to compounds that disrupt cell membranes and the peptidoglycan cell wall. Our screen led to the discovery of three TCS proteins with unusual regulatory properties that coordinately function to confer resistance to cell envelope stress and to support B. ovis replication in the intracellular niche. This tripartite regulatory system consists of the conserved cell envelope regulator, CenR, and a previously uncharacterized TCS, EssRS. The CenR and EssR response regulators bind a shared set of sites on the B. ovis chromosomes to control transcription of an overlapping set of genes with cell envelope functions. CenR directly interacts with EssR and functions to stimulate phosphoryl transfer from the EssS kinase to EssR and control steady-state levels of EssR protein in the cell via a post-transcriptional mechanism. Our data provide evidence for a new mode of TCS cross-regulation in which a non-cognate response regulator both regulates activity and influences cellular levels of a cognate TCS system.
 
Overall design ChIP-seq using ∆BOV_1929 / pQF-BOV_1929 (D55E)-3xFLAG and ∆BOV_1472 /pQF-BOV_1472 (D64E)-3xFLAG alleles to determine the direct binding targets of each repsonse regulator.
 
Contributor(s) Chen X, Alakavuklar M, Fiebig A, Crosson S
Citation(s) 37873345, 38032291
NIH grant(s)
Grant ID Grant title Affiliation Name
R35 GM131762 Molecular mechanisms controlling stress responses and cell adhesion in bacteria MICHIGAN STATE UNIVERSITY Sean Crosson
Submission date Apr 06, 2023
Last update date Jan 03, 2024
Contact name Sean Crosson
E-mail(s) [email protected]
Phone 5178845345
Organization name Michigan State University
Department Dept. Microbiology and Molecular Genetics
Street address 567 Wilson Rd
City East Lansing
State/province Michigan
ZIP/Postal code 48824
Country USA
 
Platforms (1)
GPL33317 NextSeq 2000 (Brucella ovis)
Samples (10)
GSM7152950 BOV_1929(D55E)_input_1
GSM7152951 BOV_1929(D55E)_output_1
GSM7152952 BOV_1929(D55E)_input_2
This SubSeries is part of SuperSeries:
GSE229183 A unique mode of cross regulation in a cell envelope stress signaling system
Relations
BioProject PRJNA952993

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE229120_cenR_D55E_1.csv.gz 443 b (ftp)(http) CSV
GSE229120_cenR_D55E_2.csv.gz 2.5 Kb (ftp)(http) CSV
GSE229120_cenR_D55E_3.csv.gz 376 b (ftp)(http) CSV
GSE229120_essR_D64E_1.csv.gz 3.1 Kb (ftp)(http) CSV
GSE229120_essR_D64E_2.csv.gz 2.2 Kb (ftp)(http) CSV
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Raw data are available in SRA
Processed data are available on Series record

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