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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jun 01, 2023 |
| Title |
Gene expression profile at single cell level of murine macrophages infected with Mtb (-/+ TLR2) |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
The macrophage is a cellular reservoir for Mtb infection. We profiled BMDM following Mtb infection.
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| Overall design |
Murine macrophages (-/+ TLR2) were infected with H37Rv Mtb and profiled by 10X genomics,
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| Contributor(s) |
Bryson B, Barczak A |
| Citation(s) |
37439558 |
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| Submission date |
May 11, 2023 |
| Last update date |
Aug 31, 2023 |
| Contact name |
Bryan Bryson |
| E-mail(s) |
[email protected]
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| Phone |
8324839625
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| Organization name |
MIT
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| Department |
Biological Engineering
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| Lab |
Bryson Lab
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| Street address |
400 Technology Square
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| City |
Cambridge |
| State/province |
MA |
| ZIP/Postal code |
02139 |
| Country |
USA |
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| Platforms (1) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
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| Samples (2) |
| GSM7327910 |
Pooled mouse experiment (WT_Unstim, WT_PIM6, WT_H37Rv, TLR2KO_Unstim, TLR2KO_PIM6, TLR2KO_H37Rv) - GEX |
| GSM7327911 |
Pooled mouse experiment (WT_Unstim, WT_PIM6, WT_H37Rv, TLR2KO_Unstim, TLR2KO_PIM6, TLR2KO_H37Rv) - HTO |
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| Relations |
| BioProject |
PRJNA971605 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE232320_BarcodeMapping.csv.gz |
220 b |
(ftp)(http) |
CSV |
| GSE232320_RAW.tar |
87.8 Mb |
(http)(custom) |
TAR (of H5) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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