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Series GSE232692 Query DataSets for GSE232692
Status Public on Aug 15, 2024
Title Rapid retinoic acid-induced trophectoderm model from human induced pluripotent stem cells
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary A limited number of accessible and representative models of human trophoblast cells currently exist for disease modeling and improving our understanding of placentation. Current stem cell models involve either a transition through a naïve stem cell fate or precise dynamic control of multiple interacting growth factor and small molecule cues. Here, we show that simple exposure of hiPSCs to two small molecules, retinoic acid (RA) and the Wnt signaling agonist CHIR 99021 (CHIR), results in rapid, synergistic upregulation of CDX2, an important transcription factor for trophectoderm cell induction and maintenance of the trophoblast cell population. RA+CHIR-treated cells have a transcriptional profile with high similarity to that of primary trophectoderm cells, and they can also be further differentiated into cells with features of syncytiotrophoblasts and extravillous trophoblasts. We assessed RA+CHIR-treated cells for the established set of criteria defining a trophectoderm cell model, and the cells possess all of the features necessary to be considered a valid model. Taken together, our data demonstrate the development of a simple method for the generation of functional trophoblast-like cells that can be used to better understand mechanisms and interactions involving the placenta.
 
Overall design Gene expression profiling analysis of RNA-seq data from IMR90-4 iPS cells during differentiation toward trophoectoderm. Samples were collected from days 0, 1, 3, and 5 of the differentiation in duplicate.
 
Contributor(s) Lemke KA, Sarkar CA, Azarin SM
Citation(s) 39107470
Submission date May 17, 2023
Last update date Aug 15, 2024
Contact name Samira Azarin
Organization name University of Minnesota
Department Chemical Engineering and Materials Science
Street address 421 Washington Ave SE, RM151R Amundson Hall
City Minneapolis
State/province MN
ZIP/Postal code 55455
Country USA
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (8)
GSM7371858 day0_rep1
GSM7371859 day0_rep2
GSM7371860 day1_rep1
Relations
BioProject PRJNA973592

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE232692_TPM_AllSamples_ver2.csv.gz 1.3 Mb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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