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| Status |
Public on Sep 07, 2024 |
| Title |
LINE1 and PRC2 control nucleolar organization and repression of the 8C-state in human ESCs |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
Other
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
May 19, 2023 |
| Last update date |
Sep 09, 2024 |
| Contact name |
Juan Zhang |
| E-mail(s) |
[email protected]
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| Organization name |
LTRI
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| Street address |
25 Orde Street, Room 6-1001 MRS
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| City |
Toronto |
| State/province |
Ontario |
| ZIP/Postal code |
M5T 3H7 |
| Country |
Canada |
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| Platforms (5)
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| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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| Samples (112)
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| GSM7393678 |
Rep2, ASO-Ctr |
| GSM7393680 |
Rep2, sO-L1 |
| GSM7393681 |
Rep2, ASO-L1 |
| GSM7393983 |
RSeT media Rep1, ASO-Ctr |
| GSM7393984 |
RSeT media Rep1, SO-L1 |
| GSM7393985 |
RSeT media Rep1, ASO-L1 |
| GSM7393987 |
RSeT media Rep2, ASO-Ctr |
| GSM7393988 |
RSeT media Rep2, SO-L1 |
| GSM7393989 |
RSeT media Rep2, ASO-L1 |
| GSM7393990 |
RSeT media Rep3, ASO-Ctr |
| GSM7393991 |
RSeT media Rep3, SO-L1 |
| GSM7393993 |
RSeT media Rep3, ASO-L1 |
| GSM7393994 |
RSeT media Rep4, ASO-Ctr |
| GSM7393995 |
RSeT media Rep4, SO-L1 |
| GSM7393996 |
RSeT media Rep4, ASO-L1 |
| GSM7394459 |
Rep1, ASO-Ctr+NT-siRNA |
| GSM7394460 |
Rep1, ASO-L1+NT-siRNA |
| GSM7394461 |
Rep1, ASO-L1+TPRX1-siRNA |
| GSM7394464 |
Rep2, ASO-Ctr+NT-siRNA |
| GSM7394465 |
Rep2, ASO-L1+NT-siRNA |
| GSM7394467 |
Rep2, ASO-L1+TPRX1-siRNA |
| GSM7394470 |
Rep3, ASO-Ctr+NT-siRNA |
| GSM7394471 |
Rep3, ASO-L1+NT-siRNA |
| GSM7394472 |
Rep3, ASO-L1+TPRX1-siRNA |
| GSM7395090 |
RSeT_H9,L1KD Rep1, ASO-Ctr |
| GSM7395091 |
RSeT_H9,L1KD Rep1, sO-L1 |
| GSM7395092 |
RSeT_H9,L1KD Rep1, ASO-L1 |
| GSM7395093 |
RSeT_H9,L1KD Rep2, ASO-Ctr |
| GSM7395094 |
RSeT_H9,L1KD Rep2, sO-L1 |
| GSM7395095 |
RSeT_H9,L1KD Rep2, ASO-L1 |
| GSM7395097 |
RSeT_H9,L1KD Rep3, ASO-Ctr |
| GSM7395098 |
RSeT_H9,L1KD Rep3, sO-L1 |
| GSM7395099 |
RSeT_H9,L1KD Rep3, ASO-L1 |
| GSM7395100 |
RSeT_H9,L1KD Rep4, ASO-Ctr |
| GSM7395101 |
RSeT_H9,L1KD Rep4, sO-L1 |
| GSM7395102 |
RSeT_H9,L1KD Rep4, ASO-L1 |
| GSM7395264 |
SO_L1 |
| GSM7395265 |
ASO_L1 |
| GSM7520179 |
RSeT H9, rep1 Whole-cell DNA |
| GSM7520180 |
RSeT H9, rep1 Nucleolar DNA |
| GSM7520181 |
RSeT H9, rep2 Whole-cell DNA |
| GSM7520182 |
RSeT H9, rep2 Nucleolar DNA |
| GSM7520183 |
RSeT H9, rep3 Whole-cell DNA |
| GSM7520184 |
RSeT H9, rep3 Nucleolar DNA |
| GSM7520185 |
Primed H9, rep1 Whole-cell DNA |
| GSM7520186 |
Primed H9, rep1 Nucleolar DNA |
| GSM7520187 |
Primed H9, rep2 Whole-cell DNA |
| GSM7520188 |
Primed H9, rep2 Nucleolar DNA |
| GSM7520189 |
Primed H9, rep3 Whole-cell DNA |
| GSM7520190 |
Primed H9, rep3 Nucleolar DNA |
| GSM7520191 |
Primed H9, rep1 Dam-only |
| GSM7520192 |
Primed H9, rep1 LMNB1-dam |
| GSM7520193 |
Primed H9, rep2 Dam-only |
| GSM7520194 |
Primed H9, rep2 LMNB1-dam |
| GSM7520195 |
Primed H9, rep3 Dam-only |
| GSM7520196 |
Primed H9, rep3 LMNB1-dam |
| GSM7520197 |
RSeT H9, rep1 Dam-only |
| GSM7520198 |
RSeT H9, rep1 LMNB1-dam |
| GSM7520199 |
RSeT H9, rep2 Dam-only |
| GSM7520200 |
RSeT H9, rep2 LMNB1-dam |
| GSM7520201 |
RSeT H9, rep3 Dam-only |
| GSM7520202 |
RSeT H9, rep3 LMNB1-dam |
| GSM8189173 |
Rep1, SO-L1 |
| GSM8189174 |
Rep1, ASO-L1 |
| GSM8189175 |
Rep2, SO-L1 |
| GSM8189176 |
Rep2, ASO-L1 |
| GSM8189177 |
Rep3, SO-L1 |
| GSM8189178 |
Rep3, ASO-L1 |
| GSM8189179 |
Rep1, +UNC2400 |
| GSM8189180 |
Rep1, +UNC1999 |
| GSM8189181 |
Rep2, +UNC2400 |
| GSM8189182 |
Rep2, +UNC1999 |
| GSM8189183 |
Rep3, +UNC2400 |
| GSM8189184 |
Rep3, +UNC1999 |
| GSM8189185 |
L1-ChIRP- input DNA |
| GSM8189186 |
rep1_MALAT1-ChIRP-DNA |
| GSM8189187 |
rep1_L1-ChIRP-DNA |
| GSM8189188 |
rep2_MALAT1-ChIRP-DNA |
| GSM8189189 |
rep2_L1-ChIRP-DNA |
| GSM8189190 |
ASO-CtrA, 5% input |
| GSM8189191 |
ASO-L1KD, 5% input |
| GSM8189192 |
rep1_ASO-CtrA, K27me3-ChIP |
| GSM8189193 |
rep1_ASO-L1KD, K27me3-ChIP |
| GSM8189194 |
rep2_ASO-CtrA, K27me3-ChIP |
| GSM8189195 |
rep2_ASO-L1KD, K27me3-ChIP |
| GSM8473264 |
Naive_HESC_RSeT_DT_1 |
| GSM8473265 |
Naive_HESC_RSeT_DT_2 |
| GSM8473266 |
Naive_HESC_RSeT_1 |
| GSM8473267 |
Naive_HESC_RSeT_2 |
| GSM8473268 |
Primed_HESC_1 |
| GSM8473269 |
Primed_HESC_2 |
| GSM8473270 |
H3K9me3_RSeT+DT_rep1 |
| GSM8473271 |
H3K9me3_RSeT+DT_rep2 |
| GSM8473272 |
H3K9me3_RSeT_rep1 |
| GSM8473273 |
H3K9me3_RSeT_rep2 |
| GSM8473274 |
H3K9me3_Primed_rep1 |
| GSM8473275 |
H3K9me3_Primed_rep2 |
| GSM8473276 |
H3K27ac_RSeT+DT_rep1 |
| GSM8473277 |
H3K27ac_RSeT+DT_rep2 |
| GSM8473278 |
H3K27ac_RSeT_rep1 |
| GSM8473279 |
H3K27ac_RSeT_rep2 |
| GSM8473280 |
H3K27ac_Primed_rep1 |
| GSM8473281 |
H3K27ac_Primed_rep2 |
| GSM8473282 |
H3K27me3_RSeT+DT_rep1 |
| GSM8473283 |
H3K27me3_RSeT+DT_rep2 |
| GSM8473284 |
H3K27me3_RSeT_rep1 |
| GSM8473285 |
H3K27me3_RSeT_rep2 |
| GSM8473286 |
H3K27me3_Primed_rep1 |
| GSM8473287 |
H3K27me3_Primed_rep2 |
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| This SuperSeries is composed of the following SubSeries:
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| GSE232930 |
LINE1 and PRC2 control nucleolar organization and repression of the 8C-state in human ESCs [RNA-Seq_Primed_H9_L1KD] |
| GSE232931 |
LINE1 and PRC2 control nucleolar organization and repression of the 8C-state in human ESCs [RNA-Seq_RSeT+DT_H9_L1KD] |
| GSE232932 |
LINE1 and PRC2 control nucleolar organization and repression of the 8C-state in human ESCs [RNA-Seq_RSeT+DT_H9_L1KD+siRNA-KD] |
| GSE232937 |
LINE1 and PRC2 control nucleolar organization and repression of the 8C-state in human ESCs [RNA-Seq_RSeT_H9_L1KD] |
| GSE232938 |
LINE1 and PRC2 control nucleolar organization and repression of the 8C-state in human ESCs [scRNA-seq] |
| GSE236234 |
LINE1 and PRC2 control nucleolar organization and repression of the 8C-state in human ESCs [NAD-seq] |
| GSE236235 |
LINE1 and PRC2 control nucleolar organization and repression of the 8C-state in human ESCs [pA-DamID LAD-seq] |
| GSE263287 |
LINE1 and PRC2 control nucleolar organization and repression of the 8C-state in human ESCs [RNA-seq_PXGL H9_L1KD] |
| GSE263288 |
LINE1 and PRC2 control nucleolar organization and repression of the 8C-state in human ESCs [RNA-Seq_RSeT+DT H9_EZH2i] |
| GSE263289 |
LINE1 and PRC2 control nucleolar organization and repression of the 8C-state in human ESCs [ChIRP-seq,RSeT+DT H9] |
| GSE263290 |
LINE1 and PRC2 control nucleolar organization and repression of the 8C-state in human ESCs [H3K27me3 ChIP-seq,RSeT+DT_L1KD] |
| GSE275237 |
LINE1 and PRC2 control nucleolar organization and repression of the 8C-state in human ESCs [RNA-seq_primed,RSeT,RSeT+DT_hESCs] |
| GSE275238 |
LINE1 and PRC2 control nucleolar organization and repression of the 8C-state in human ESCs [ChIP-seq_primed,RSeT,RSeT+DT_hESCs] |
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| Relations |
| BioProject |
PRJNA974446 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE232939_RAW.tar |
11.3 Gb |
(http)(custom) |
TAR (of BW, MTX, TSV) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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