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| Status |
Public on Oct 17, 2023 |
| Title |
Genome-wide expression analysis of Arabidopsis Col-0 plants under different air humidity |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
The goal of this study is to demonstrate the global expression profile of Arabidopsis Col-0 wild type plant leaves in response to low, moderate and high humidity.
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| Overall design |
Four-week-old Col-0 plants were treated with low, moderate and high humidity for 1 h. Leaves were collected at 1 h after different humidity treatment. Total RNA was extracted from the tissues using Trizol Reagent (Invitrogen) based on the manufacture's instruction, and genomic DNA was removed using the DNaseI (Invitrogen). RNA was further purified by using the RNeasy MinElute Cleanup kit (QIAGEN). RNA quality check, library construction, and RNA sequencing were performed by the Majorbio company.
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| Contributor(s) |
Yao L, Jiang Z, Xin X |
| Citation(s) |
37728254 |
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| Submission date |
Jul 05, 2023 |
| Last update date |
Jan 17, 2024 |
| Contact name |
xiufang xin |
| E-mail(s) |
[email protected]
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| Organization name |
Chinese Academy of Sciences
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| Street address |
Xuhui
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| City |
Shanghai |
| ZIP/Postal code |
200000 |
| Country |
China |
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| Platforms (1) |
| GPL26208 |
Illumina NovaSeq 6000 (Arabidopsis thaliana) |
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| Samples (12)
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| GSM7548225 |
Lh, 1h, biol rep4 |
| GSM7548226 |
Mh, 1h, biol rep1 |
| GSM7548227 |
Mh, 1h, biol rep2 |
| GSM7548228 |
Mh, 1h, biol rep3 |
| GSM7548229 |
Mh, 1h, biol rep4 |
| GSM7548230 |
Hh, 1h, biol rep1 |
| GSM7548231 |
Hh, 1h, biol rep2 |
| GSM7548232 |
Hh, 1h, biol rep3 |
| GSM7548233 |
Hh, 1h, biol rep4 |
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| Relations |
| BioProject |
PRJNA991427 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE236463_all_rawcount.xlsx |
3.9 Mb |
(ftp)(http) |
XLSX |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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