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Series GSE23750 Query DataSets for GSE23750
Status Public on May 24, 2011
Title Role of REG 1 in Entamoeba histolytica colitis
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Differential expression was used to access gene differences after Entamoeba histolytica infection.
Entamoeba histolytica is an important diarrheal pathogen worldwide, and induces apoptosis of the intestinal epithelium as part of its disease process. Regenerating (REG) 1 protein is anti-apoptotic. We investigated the involvement of REG 1 in E. histolytica colitis. Colonic biopsy samples were obtained from 8 subjects with acute E. histolytica colitis, and again 60 day later during convalescence. Gene expression in the human colon during acute and convalescent E. histolytica disease was evaluated using microarray and confirmed by polymerase chain reaction (PCR). REG 1 protein expression was evaluated with immunohistochemistry. The mechanism of REG 1 involvement in E. histolytica disease was subsequently investigated with a mouse model. REG 1A and REG 1B were the most upregulated genes in the human intestine in acute versus convalescent E. histolytica disease (p=0.003 and p=0.006 respectively). PCR confirmed the microarray results (p=<0.001 and p=0.001 respectively). Increased REG 1A and REG 1B protein expression was similarly observed by immunohistochemistry. REG 1 -/-mice were found to be significantly more susceptible to E. histolytica infection than wild type mice.
 
Overall design Intestinal Biopsies were taken at day 1 and day 60 post infection.
 
Contributor(s) Peterson KM, Petri WA, Elkahloun AG
Citation(s) 21586335, 26346926
Submission date Aug 23, 2010
Last update date Oct 30, 2019
Contact name Christopher Pan
E-mail(s) [email protected]
Organization name NIH
Department NHGRI
Street address Rm 5228, Bldg 50, South Dr.
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platforms (1)
GPL6244 [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [transcript (gene) version]
Samples (16)
GSM586091 WP_1 D1_2486350TT
GSM586092 WP_2 D1_2556879CC
GSM586093 WP_3 D1_2607732TT
Relations
BioProject PRJNA130751

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE23750_RAW.tar 71.5 Mb (http)(custom) TAR (of CEL, CHP)
Processed data included within Sample table
Processed data provided as supplementary file

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