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| Status |
Public on Nov 09, 2023 |
| Title |
Systematic Dissection of Sequence Features Affecting the Binding Specificity of a Pioneer Factor Reveals Binding Synergy Between FOXA1 and AP-1 |
| Organisms |
Homo sapiens; synthetic construct |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Other
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
Nov 09, 2023 |
| Last update date |
Nov 10, 2023 |
| Contact name |
Lu Bai |
| E-mail(s) |
[email protected]
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| Organization name |
Penn State University
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| Street address |
406 South Frear Building
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| City |
University Park |
| State/province |
PA |
| ZIP/Postal code |
16802 |
| Country |
USA |
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| Platforms (3) |
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| Samples (53)
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| GSM7889152 |
A549, H3K9me3, ChIP-ISO input, biol rep 1 |
| GSM7889153 |
A549, H3K9me3, ChIP-ISO ChIP, biol rep 1 |
| GSM7889154 |
A549, H3K27me3, ChIP-ISO input, biol rep 1 |
| GSM7889155 |
A549, H3K27me3, ChIP-ISO ChIP, biol rep 1 |
| GSM7889156 |
A549, FOXA1, ChIP-ISO ChIP, biol rep 1 |
| GSM7889157 |
A549, FOXA1, ChIP-ISO ChIP, biol rep 2 |
| GSM7889158 |
A549, FOXA1, ChIP-ISO input, biol rep 1 |
| GSM7889159 |
A549, FOXA1, ChIP-ISO input, biol rep 2 |
| GSM7889160 |
A549, FOXA1, ChIP, Biol Rep 1 |
| GSM7889161 |
A549, FOXA1, ChIP, Biol Rep 2 |
| GSM7889162 |
A549, input |
| GSM7889163 |
A549, H3K9me3, ChIP, Biol Rep 1 |
| GSM7889164 |
A549, H3K9me3, ChIP, Biol Rep 2 |
| GSM7889165 |
A549, H3K27me3, ChIP, Biol Rep1 |
| GSM7889166 |
A549, H3K27me3, ChIP, Biol Rep2 |
| GSM7889167 |
A549, A-Fos, No Dox, FOXA1, ChIP, Biol Rep 1 |
| GSM7889168 |
A549, A-Fos, No Dox, FOXA1, ChIP, Biol Rep 2 |
| GSM7889169 |
A549, A-Fos, Dox, FOXA1, ChIP, Biol Rep 1 |
| GSM7889170 |
A549, A-Fos, Dox, FOXA1, ChIP, Biol Rep 2 |
| GSM7889171 |
A549, A-Fos, No Dox, FOSL2, ChIP, Biol Rep 1 |
| GSM7889172 |
A549, A-Fos, No Dox, FOSL2, ChIP, Biol Rep 2 |
| GSM7889173 |
A549, A-Fos, Dox, FOSL2, ChIP, Biol Rep 1 |
| GSM7889174 |
A549, A-Fos, Dox, FOSL2, ChIP, Biol Rep 2 |
| GSM7889175 |
A549, A-Fos, Input, Rep1 |
| GSM7889176 |
A549, A-Fos, Input, Rep2 |
| GSM7889189 |
A549, AFos Knock-In, minus Dox, RNA-seq, rep1 |
| GSM7889190 |
A549, AFos Knock-In, minus Dox, RNA-seq, rep2 |
| GSM7889191 |
A549, AFos Knock-In, plus Dox, RNA-seq, rep1 |
| GSM7889192 |
A549, AFos Knock-In, plus Dox, RNA-seq, rep2 |
| GSM7889858 |
1nM FOXA1, Free Band, Rep 1 |
| GSM7889859 |
1nM FOXA1, Shifted Band, Rep 1 |
| GSM7889860 |
1nM FOXA1, Free Band, Rep 2 |
| GSM7889861 |
1nM FOXA1, Shifted Band, Rep 2 |
| GSM7889862 |
3nM FOXA1, Free Band, Rep 1 |
| GSM7889863 |
3nM FOXA1, Shifted Band, Rep 1 |
| GSM7889864 |
3nM FOXA1, Free Band, Rep 2 |
| GSM7889865 |
3nM FOXA1, Shifted Band, Rep 2 |
| GSM7889866 |
10nM FOXA1, Free Band, Rep 1 |
| GSM7889867 |
10nM FOXA1, Shifted Band, Rep 1 |
| GSM7889868 |
10nM FOXA1, Free Band, Rep 2 |
| GSM7889869 |
10nM FOXA1, Shifted Band, Rep 2 |
| GSM7889870 |
20nM FOXA1, Free Band, Rep 1 |
| GSM7889871 |
20nM FOXA1, Shifted Band, Rep 1 |
| GSM7889872 |
20nM FOXA1, Free Band, Rep 2 |
| GSM7889873 |
20nM FOXA1, Shifted Band, Rep 2 |
| GSM7889874 |
30nM FOXA1, Free Band, Rep 1 |
| GSM7889875 |
30nM FOXA1, Shifted Band, Rep 1 |
| GSM7889876 |
30nM FOXA1, Free Band, Rep 2 |
| GSM7889877 |
30nM FOXA1, Shifted Band, Rep 2 |
| GSM7889878 |
60nM FOXA1, Free Band, Rep 1 |
| GSM7889879 |
60nM FOXA1, Shifted Band, Rep 1 |
| GSM7889880 |
60nM FOXA1, Free Band, Rep 2 |
| GSM7889881 |
60nM FOXA1, Shifted Band, Rep 2 |
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| This SuperSeries is composed of the following SubSeries:
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| GSE247411 |
Systematic Dissection of Sequence Features Affecting the Binding Specificity of a Pioneer Factor Reveals Binding Synergy Between FOXA1 and AP-1 [ChIP-ISO] |
| GSE247412 |
Systematic Dissection of Sequence Features Affecting the Binding Specificity of a Pioneer Factor Reveals Binding Synergy Between FOXA1 and AP-1 [ChIP-seq] |
| GSE247414 |
Systematic Dissection of Sequence Features Affecting the Binding Specificity of a Pioneer Factor Reveals Binding Synergy Between FOXA1 and AP-1 [RNA-seq] |
| GSE247431 |
Systematic Dissection of Sequence Features Affecting the Binding Specificity of a Pioneer Factor Reveals Binding Synergy Between FOXA1 and AP-1 [EMSA-seq] |
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| Relations |
| BioProject |
PRJNA1037545 |
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