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| Status |
Public on Sep 23, 2024 |
| Title |
The response to desiccation in Acinetobacter baumannii |
| Organisms |
Acinetobacter baumannii ACICU; Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
The long-term resistance to desiccation on abiotic surfaces is a key determinant of the adaptive success of Acinetobacter baumannii as a healthcare-associated bacterial pathogen. Here, the cellular and molecular mechanisms enabling A. baumannii to resist desiccation and persist on abiotic surfaces were investigated. Experiments were set up to mimic the A. baumannii response to air-drying that would occur when bacterial cells contaminate fomites in hospitals. Resistance to desiccation and transition to the “viable but nonculturable” (VBNC) state were determined in the laboratory-adapted strain ATCC 19606T and the epidemic strain ACICU. Culturability, membrane integrity, metabolic activity, virulence, and gene expression profile were compared between the two strains at different stages of desiccation. Upon desiccation, ATCC 19606T and ACICU cells lose culturability and membrane integrity, lower their metabolism, and enter the VBNC state. However, desiccated A. baumannii cells fully recover culturability and virulence in an insect infection model following rehydration in physiological buffers or human biological fluids. Transcriptome and chemical analyses of A. baumannii cells during desiccation unveiled the production of protective metabolites (L-cysteine and L-glutamate) and decreased energetic metabolism consequent to activation of the glyoxylate shunt (GS) pathway, as confirmed by reduced resuscitation efficiency of aceA mutants, lacking the key enzyme of the GS pathway. VBNC cell formation and extensive metabolic reprogramming provide a biological basis for the response of A. baumannii to desiccation, with implications on environmental control measures aimed at preventing the transmission of A. baumannii infection in hospitals.
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| Overall design |
The two strains of A. baumannii, namely ATCC 19606T and ACICU, underwent desiccation for 1 week. Before and after the desiccation process, samples were collected for RNA isolation and purification, involving three independent procedures for each sample. The RNA-seq analysis, RNA quality assessment, library preparation, sequencing, and subsequent statistical analysis were conducted at the GENEWIZ Biotechnology Facility, as previously described [doi: 10.1128/spectrum.00961-22]. Comparative expression analysis, utilizing pairwise comparisons between samples before and after desiccation, was carried out to determine the genes that play a pivotal role in desiccation resistance within these two strains.
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| Web link |
https://papers.ssrn.com/sol3/papers.cfm?abstract_id=4731192
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| Contributor(s) |
Lucidi M, Capecchi G, Spagnoli C, Basile A, Artuso I, Persichetti L, Fardelli E, Capellini G, Visaggio D, Imperi F, Rampioni G, Leoni L, Visca P |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
Nov 30, 2023 |
| Last update date |
Sep 24, 2024 |
| Contact name |
Massimiliano Lucidi |
| E-mail(s) |
[email protected]
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| Phone |
+390657336346
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| Organization name |
University of Roma Tre
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| Department |
Sciences
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| Street address |
Viale Guglielmo Marconi 446
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| City |
Rome |
| State/province |
Rome |
| ZIP/Postal code |
00146 |
| Country |
Italy |
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| Platforms (2) |
| GPL33972 |
Illumina NovaSeq 6000 (Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841) |
| GPL33973 |
Illumina NovaSeq 6000 (Acinetobacter baumannii ACICU) |
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| Samples (12)
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| GSM7925247 |
ATCC 19606T before desiccation (first biological replicate) |
| GSM7925248 |
ATCC 19606T before desiccation (second biological replicate) |
| GSM7925249 |
ATCC 19606T before desiccation (third biological replicate) |
| GSM7925250 |
ACICU before desiccation (first biological replicate) |
| GSM7925251 |
ACICU before desiccation (second biological replicate) |
| GSM7925252 |
ACICU before desiccation (third biological replicate) |
| GSM7925253 |
ATCC 19606T after 1-week desiccation (first biological replicate) |
| GSM7925254 |
ATCC 19606T after 1-week desiccation (second biological replicate) |
| GSM7925255 |
ATCC 19606T after 1-week desiccation (third biological replicate) |
| GSM7925256 |
ACICU after 1-week desiccation (first biological replicate) |
| GSM7925257 |
ACICU after 1-week desiccation (second biological replicate) |
| GSM7925258 |
ACICU after 1-week desiccation (third biological replicate) |
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| Relations |
| BioProject |
PRJNA1047031 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE249021_RAW.tar |
720.0 Kb |
(http)(custom) |
TAR (of TXT) |
SRA Run Selector |
| Raw data are available in SRA |
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