NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE249622 Query DataSets for GSE249622
Status Public on Dec 07, 2023
Title scRNASeq Data of CD4 Tregs and Teffectors in HS lesional skin and healthy skin
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Hidradenitis suppurativa (HS) is an inflammatory skin disease with limited therapeutic options. CD4 T Cells have been described as more inflammatory than T cells in healthy skin. To better understand alterations within the T cell compartment, we profiled CD4 Teffector cells and regulatory T cells (Treg) from inflammatory HS skin lesions and healthy control skin via scRNASequencing.
 
Overall design scRNASeq of Treg and CD4 Teffector cells sort-purified from enzymatically digested skin of biopsied hidradenitis suppurativa inflammatory lesions or of healthy control skin
 
Contributor(s) Lowe MM, Rosenblum MD
Citation(s) 38113104
Submission date Dec 07, 2023
Last update date Mar 07, 2024
Contact name Margaret Lowe
Organization name UCSF
Street address 513 Parnassus Avenue, HSW1201B
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (14)
GSM7951925 HS419_Treg_CD4Teff
GSM7951926 HS10x2_TregCD4Teff
GSM7951927 HS10x4_Treg
Relations
BioProject PRJNA1049832

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE249622_RAW.tar 481.4 Mb (http)(custom) TAR (of MTX, TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap