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Series GSE250323 Query DataSets for GSE250323
Status Public on Jan 15, 2024
Title A novel regulator of the PI3K/AKT pathway encoded by circ-PDE5A inhibits esophageal squamous carcinoma progression by promoting USP14-mediated deubiquitination of PIK3IP1
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Objective: Esophageal squamous carcinoma (ESCC) is one of the most common gastrointestinal tumors, and the PI3K/AKT signaling pathway plays a key role in the development of ESCC. circRNAs have been reported to be involved in the regulation of PI3K/AKT signaling, but the underlying mechanisms are unclear. This study aimed to identify protein-coding circRNAs and investigate their function in ESCC.
Design: Differential expression of circRNAs between ESCC tissues and adjacent normal tissues was identified using circRNA microarray analysis. A novel protein encoded by circ-PDE5A was identified by LC-MS/MS. Molecular biological methods were used to explore the biological functions and regulatory mechanisms of circ-PDE5A and its encoded PDE5A-500aa novel protein in ESCC. Construction of a nanoplatform for the coupling of circRNAs to investigate the therapeutic translation value of circ-PDE5A.
Results: We found that circ-PDE5A expression was downregulated in ESCC cells and tissues, and its low expression was associated with later clinicopathological staging and poorer prognosis. Functionally, circ-PDE5A inhibited ESCC proliferation and metastasis in vitro and in vivo by encoding the novel PDE5A-500aa protein, which was identified as a key player in regulating PI3K/AKT signaling activation in ESCC. Mechanistically, the novel PDE5A-500aa protein binds directly to PIK3IP1 and promotes USP14-mediated deubiquitination of the k48-linked polyubiquitin chain at residue K198 of PIK3IP1, thereby attenuating PI3K/AKT pathway in ESCC. In addition, the circ-PDE5A plasmid-coupled reduction-responsive nanoplatform successfully inhibited ESCC growth and metastasis.
Conclusions: circ-PDE5A represents an epigenetic mechanism regulating PI3K/ATK signaling and serves as a novel and promising therapeutic target and prognostic marker for ESCC.
 
Overall design To explore the specific mechanism by which circ-PDE5A affects the biological function of ESCC, we constructed KYSE30 cells with stable overexpression of circ-PDE5A and performed RNA-sequencing analysis.
 
Contributor(s) Lei K, Liang R, Liang J, Wang M
Citation(s) 38658954
Submission date Dec 15, 2023
Last update date May 10, 2024
Contact name kai lei
E-mail(s) [email protected]
Organization name Sun Yat-sen Memorial Hospital, Sun Yat-sen University
Department Department of Thoracic Surgery
Street address 107 Yan Jiang West Road
City Guangzhou
ZIP/Postal code 510120
Country China
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (6)
GSM7977617 KYSE30 cells, vector 1
GSM7977618 KYSE30 cells, vector 2
GSM7977619 KYSE30 cells, vector 3
Relations
BioProject PRJNA1053364

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Supplementary file Size Download File type/resource
GSE250323_matrix_transcript.count.txt.gz 1.7 Mb (ftp)(http) TXT
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Raw data are available in SRA

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