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Series GSE250332 Query DataSets for GSE250332
Status Public on Nov 25, 2024
Title FTO degradation targeting enhances anti-tumor immunity
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary The m6A RNA demethylase Fat mass and obesity-associated protein (FTO) is aberrantly upregulated in numerous cancers and promotes tumor development and therapeutic resistance. Here, using public datasets and screening, we show that FTO is ubiquitinated at lysine 162 by its E3 ligase DTX2, followed by recognition by UFD1, leading to degradation in the proteasomes. Furthermore, we identified vitamin E succinate (VES) as a natural first-in-class degrader for FTO by binding to FTO and DTX2, thus enhancing FTO-DTX2 interaction, leading to increased FTO ubiquitination and degradation and enhanced anti-tumor immunity and response to immunotherapy. Genetic or pharmacological FTO knockdown by VES increased m6A methylation in the LIF gene and thus decreased LIF mRNA decay, and thus sensitized tumor cells to T cell-mediated cytotoxicity. Taken together, our findings elucidated the underlying molecular mechanism for FTO protein degradation and the first natural FTO degrader that reprograms the anti-tumor immunity.
 
Overall design RNA Seq of MEL624 cells treated with Vehicle or 25uM Vitamin E succinate for 72 hours.
 
Contributor(s) Wilkinson E, Cui Y
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Submission date Dec 15, 2023
Last update date Nov 26, 2024
Contact name Yanhong Cui
E-mail(s) [email protected]
Organization name University of Chicago
Department Medicine
Street address 5841 S Maryland Ave
City Chicago
State/province IL
ZIP/Postal code 60615
Country USA
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (4)
GSM7977736 Vehicle-1
GSM7977737 Vehicle-2
GSM7977738 VES25-1
Relations
BioProject PRJNA1053378

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE250332_RAW.tar 4.0 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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