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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jan 01, 2011 |
| Title |
In vivo cell-autonomous transcriptional abnormalities revealed in mice expressing mutant huntingtin in striatal but not cortical neurons |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by array
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| Summary |
Huntington’s disease (HD), caused by a CAG repeat expansion in the huntingtin (HTT) gene, is characterized by abnormal protein aggregates and motor and cognitive dysfunction. Htt protein is ubiquitously expressed, but the striatal medium spiny neuron (MSN) is most susceptible to neuronal dysfunction and death. Abnormal gene expression represents a core pathogenic feature of HD, but the relative roles of cell-autonomous and non-cell-autonomous effects on transcription remain unclear. To determine the extent of cell-autonomous dysregulation in the striatum in vivo, we examined genome-wide RNA expression in symptomatic D9-N171-98Q (a.k.a. DE5) transgenic mice in which the forebrain expression of the first 171 amino acids of human Htt with a 98Q repeat expansion is limited to MSNs. Microarray data generated from these mice were compared to those generated on the identical array platform from a pan-neuronal HD mouse model, R6/2, carrying two different CAG repeat lengths, and a relatively high degree of overlap of changes in gene expression was revealed. We further focused on known canonical pathways associated with excitotoxicity, oxidative stress, mitochondrial dysfunction, dopamine signaling and trophic support, among others. While genes related to excitotoxicity, dopamine signaling and trophic support, were altered in both DE5 and R6/2 transgenic mice, which may be either cell-autonomous or non-cell-autonomous,, genes related to mitochondrial dysfunction, oxidative stress and the peroxisome proliferator-activated receptor are primarily affected in DE5 transgenic mice, indicating cell autonomous mechanisms Overall, our results demonstrate that HD-induced dysregulation of the striatal transcriptome can be largely attributed to intrinsic effects of mutant Htt,,such that mutant Htt-induced effects in cortical neurons is not necessary for striatal dysfunction/degeneration.
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| Overall design |
Striatum from DE5 transgenic mice vs. wt littermate controls
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| Contributor(s) |
Ehrlich ME, Kim S, Brown TB, Coppola G, Thomas EA, Geschwind D |
| Citation(s) |
21177255 |
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| Submission date |
Nov 09, 2010 |
| Last update date |
Jun 14, 2018 |
| Contact name |
Elizabeth A. Thomas |
| Organization name |
The Scripps Research Institute
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| Department |
Molecular Biology
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| Street address |
10550 N. Torrey Pines Rd
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| City |
La Jolla |
| State/province |
CA |
| ZIP/Postal code |
92037 |
| Country |
USA |
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| Platforms (1) |
| GPL6885 |
Illumina MouseRef-8 v2.0 expression beadchip |
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| Samples (7)
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| Relations |
| BioProject |
PRJNA134475 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE25232_RAW.tar |
3.1 Mb |
(http)(custom) |
TAR |
| GSE25232_non-normalized_data.txt.gz |
2.2 Mb |
(ftp)(http) |
TXT |
| Processed data included within Sample table |
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