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GEO accession:
Series GSE254378
Query DataSets for GSE254378
Status
Public on Nov 27, 2024
Title
Ldb1 establishes multi-enhancer networks to regulate gene expression
Organism
Mus musculus
Experiment type
Other
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation missing
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Submission date
Jan 28, 2024
Last update date
Nov 27, 2024
Contact name
Nicholas Aboreden
E-mail(s)
[email protected]
Organization name
University of Pennsylvania
Lab
Blobel Lab
Street address
3615 Civic Center Blvd
City
Philadelphia
State/province
PA
ZIP/Postal code
19104
Country
USA
Platforms (2)
GPL30172
NextSeq 2000 (Mus musculus)
GPL32159
NextSeq 1000 (Mus musculus)
Samples (91)
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More...
GSM8041131
LDB1_AID_TRI_C_untreated_biorep1
GSM8041132
LDB1_AID_TRI_C_untreated_biorep2
GSM8041133
LDB1_AID_TRI_C_untreated_biorep3
GSM8041134
LDB1_AID_TRI_C_untreated_biorep4
GSM8041135
LDB1_AID_TRI_C_auxin_biorep1
GSM8041136
LDB1_AID_TRI_C_auxin_biorep2
GSM8041137
LDB1_AID_TRI_C_auxin_biorep3
GSM8041138
LDB1_AID_TRI_C_auxin_biorep4
GSM8041139
LDB1_AID_MICRO_C_untreated_rep1
GSM8041140
LDB1_AID_MICRO_C_untreated_rep2
GSM8041141
LDB1_AID_MICRO_C_untreated_rep3
GSM8041142
LDB1_AID_MICRO_C_untreated_rep4
GSM8041143
LDB1_AID_MICRO_C_untreated_rep5
GSM8041144
LDB1_AID_MICRO_C_untreated_rep6
GSM8041145
LDB1_AID_MICRO_C_untreated_rep7
GSM8041146
LDB1_AID_MICRO_C_untreated_rep8
GSM8041147
LDB1_AID_MICRO_C_untreated_rep9
GSM8041148
LDB1_AID_MICRO_C_auxin_rep1
GSM8041149
LDB1_AID_MICRO_C_auxin_rep2
GSM8041150
LDB1_AID_MICRO_C_auxin_rep3
GSM8041151
LDB1_AID_MICRO_C_auxin_rep4
GSM8041152
LDB1_AID_MICRO_C_auxin_rep5
GSM8041153
LDB1_AID_MICRO_C_auxin_rep6
GSM8041154
LDB1_AID_MICRO_C_auxin_rep7
GSM8041155
LDB1_AID_MICRO_C_auxin_rep8
GSM8041156
LDB1_AID_MICRO_C_auxin_rep9
GSM8041192
LDB1_AID_untreated_YY1_rep1
GSM8041193
LDB1_AID_untreated_YY1_rep2
GSM8041194
LDB1_AID_auxin_YY1_rep1
GSM8041195
LDB1_AID_auxin_YY1_rep2
GSM8041196
LDB1_AID_untreated_LDB1_rep1
GSM8041197
LDB1_AID_untreated_LDB1_rep2
GSM8041198
LDB1_AID_auxin_LDB1_rep1
GSM8041199
LDB1_AID_auxin_LDB1_rep2
GSM8041200
LDB1_AID_untreated_RAD21_rep1
GSM8041201
LDB1_AID_untreated_RAD21_rep2
GSM8041202
LDB1_AID_auxin_RAD21_rep1
GSM8041203
LDB1_AID_auxin_RAD21_rep2
GSM8041204
LDB1_AID_untreated_CTCF_rep1
GSM8041205
LDB1_AID_untreated_CTCF_rep2
GSM8041206
LDB1_AID_auxin_CTCF_rep1
GSM8041207
LDB1_AID_auxin_CTCF_rep2
GSM8041208
LDB1_AID_untreated_input
GSM8041209
LDB1_AID_auxin_input
GSM8041210
SMC3_AID_untreated_RAD21_rep1
GSM8041211
SMC3_AID_untreated_RAD21_rep2
GSM8041212
SMC3_AID_untreated_RAD21_rep3
GSM8041213
SMC3_AID_auxin_RAD21_rep1
GSM8041214
SMC3_AID_auxin_RAD21_rep2
GSM8041215
SMC3_AID_auxin_RAD21_rep3
GSM8041216
SMC3_AID_untreated_LDB1_rep1
GSM8041217
SMC3_AID_untreated_LDB1_rep2
GSM8041218
SMC3_AID_untreated_LDB1_rep3
GSM8041219
SMC3_AID_auxin_LDB1_rep1
GSM8041220
SMC3_AID_auxin_LDB1_rep2
GSM8041221
SMC3_AID_auxin_LDB1_rep3
GSM8041222
SMC3_AID_untreated_input
GSM8041223
SMC3_AID_auxin_input
GSM8041224
LDB1_AID_untreated_POL2_rep1
GSM8041225
LDB1_AID_untreated_POL2_rep2
GSM8041226
LDB1_AID_untreated_POL2_rep3
GSM8041227
LDB1_AID_auxin_POL2_rep1
GSM8041228
LDB1_AID_auxin_POL2_rep2
GSM8041229
LDB1_AID_auxin_POL2_rep3
GSM8041230
LDB1_prometaphase_rep1
GSM8041231
LDB1_anatelophase_rep1
GSM8041232
LDB1_early_G1_rep1
GSM8041233
LDB1_mid_G1_rep1
GSM8041234
LDB1_late_G1_rep1
GSM8041235
LDB1_prometaphase_rep2
GSM8041236
LDB1_anatelophase_rep2
GSM8041237
LDB1_early_G1_rep2
GSM8041238
LDB1_mid_G1_rep2
GSM8041239
LDB1_late_G1_rep2
GSM8041240
LDB1_prometaphase_rep3
GSM8041241
LDB1_anatelophase_rep3
GSM8041242
LDB1_early_G1_rep3
GSM8041243
LDB1_mid_G1_rep3
GSM8041244
LDB1_late_G1_rep3
GSM8219466
CTCF_AID_untreated_CTCF_rep1
GSM8219467
CTCF_AID_untreated_CTCF_rep2
GSM8219468
CTCF_AID_auxin_CTCF_rep1
GSM8219469
CTCF_AID_auxin_CTCF_rep2
GSM8219470
CTCF_AID_untreated_LDB1_rep1
GSM8219471
CTCF_AID_untreated_LDB1_rep2
GSM8219472
CTCF_AID_auxin_LDB1_rep1
GSM8219473
CTCF_AID_auxin_LDB1_rep2
GSM8637711
LDB1_AID_untreated_H3K27ac_rep1
GSM8637712
LDB1_AID_untreated_H3K27ac_rep2
GSM8637713
LDB1_AID_auxin_H3K27ac_rep1
GSM8637714
LDB1_AID_auxin_H3K27ac_rep2
This SuperSeries is composed of the following SubSeries:
GSE254372
Ldb1 establishes multi-enhancer networks to regulate gene expression [Tri-C-Seq]
GSE254373
Ldb1 establishes multi-enhancer networks to regulate gene expression [micro-C-Seq]
GSE254377
Ldb1 establishes multi-enhancer networks to regulate gene expression [ChIP-Seq]
Relations
BioProject
PRJNA1070275
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Format
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Supplementary data files not provided
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