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Series GSE254496 Query DataSets for GSE254496
Status Public on Feb 23, 2024
Title MaizeCODE reveals bi-directionally expressed enhancers that harbor molecular signatures of maize domestication
Organisms Zea mays; Zea mays subsp. parviglumis
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
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Submission date Jan 29, 2024
Last update date May 23, 2024
Contact name Jonathan Cahn
E-mail(s) [email protected]
Organization name CSHL
Street address 1 Bungtown Rd
City Cold Spring Harbor
State/province NY
ZIP/Postal code 11724
Country USA
 
Platforms (2)
GPL20156 Illumina NextSeq 500 (Zea mays)
GPL34141 Illumina NextSeq 500 (Zea mays subsp. parviglumis)
Samples (226)
GSM8043162 RNAseq in B73 coleoptilar node Rep1
GSM8043163 RNAseq in B73 coleoptilar node Rep2
GSM8043164 RNAseq in B73 ears Rep1
This SuperSeries is composed of the following SubSeries:
GSE254486 MaizeCODE reveals bi-directionally expressed enhancers that harbor molecular signatures of maize domestication [ChIP-seq]
GSE254487 MaizeCODE reveals bi-directionally expressed enhancers that harbor molecular signatures of maize domestication [B73 RNA]
GSE254488 MaizeCODE reveals bi-directionally expressed enhancers that harbor molecular signatures of maize domestication [NC350 RNA]
Relations
BioProject PRJNA1070669

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE254496_RAW.tar 24.4 Gb (http)(custom) TAR (of BROADPEAK, BW, NARROWPEAK, TXT)
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