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Series GSE257876

Query DataSets for GSE257876

Status

Public on Feb 27, 2024

Title

TF ChIP-seq from whole organism (ENCSR581THE)

Project

modENCODE

Organism

Caenorhabditis elegans

Experiment type

Genome binding/occupancy profiling by high throughput sequencing

Summary

ChIP-seq of transgenic worms expressing NFYA-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR581THE/

Citation(s)

22955616

BioProject

PRJNA63463

Submission date

Feb 25, 2024

Last update date

Sep 02, 2024

Contact name

ENCODE DCC

E-mail(s)

[email protected]

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL13776

Illumina Genome Analyzer IIx (Caenorhabditis elegans)

Samples (2)

GSM8108764	TF ChIP-seq from whole organism (ENCLB192UBI)
GSM8108765	TF ChIP-seq from whole organism (ENCLB430GMB)

Relations

Reanalyzed by

GSE276166

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE257876_ENCFF041IEI_optimal_IDR_thresholded_peaks_ce10.bigBed	28.7 Kb	(ftp)(http)	BIGBED
GSE257876_ENCFF106CBS_control_normalized_signal_ce10.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE257876_ENCFF151VXZ_read-depth_normalized_signal_ce10.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE257876_ENCFF174GXE_optimal_IDR_thresholded_peaks_ce11.bigBed	62.7 Kb	(ftp)(http)	BIGBED
GSE257876_ENCFF229RWT_peaks_and_background_as_input_for_IDR_ce11.bigBed	1.2 Mb	(ftp)(http)	BIGBED
GSE257876_ENCFF260IEI_signal_of_unique_reads_ce10.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE257876_ENCFF353KEA_peaks_and_background_as_input_for_IDR_ce10.bed.gz	761.0 Kb	(ftp)(http)	BED
GSE257876_ENCFF434UQF_read-depth_normalized_signal_ce11.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE257876_ENCFF515MNG_signal_of_unique_reads_ce11.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE257876_ENCFF554VDX_optimal_IDR_thresholded_peaks_ce11.bed.gz	2.5 Kb	(ftp)(http)	BED
GSE257876_ENCFF598EOE_peaks_and_background_as_input_for_IDR_ce10.bigBed	1.2 Mb	(ftp)(http)	BIGBED
GSE257876_ENCFF663IZF_peaks_and_background_as_input_for_IDR_ce11.bed.gz	761.1 Kb	(ftp)(http)	BED
GSE257876_ENCFF825SXC_optimal_IDR_thresholded_peaks_ce10.bed.gz	1.7 Kb	(ftp)(http)	BED
GSE257876_ENCFF885HVZ_control_normalized_signal_ce11.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE257876_RAW.tar	123.8 Mb	(http)(custom)	TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA