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Series GSE257942

Query DataSets for GSE257942

Status

Public on Feb 27, 2024

Title

TF ChIP-seq from whole organism (ENCSR592DAH)

Project

modENCODE

Organism

Caenorhabditis elegans

Experiment type

Genome binding/occupancy profiling by high throughput sequencing

Summary

ChIP-seq against eGFP-F16B12.6 in L1 larva worms.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR592DAH/

Citation(s)

22955616

BioProject

PRJNA63463

Submission date

Feb 25, 2024

Last update date

Oct 24, 2024

Contact name

ENCODE DCC

E-mail(s)

[email protected]

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL13776

Illumina Genome Analyzer IIx (Caenorhabditis elegans)

Samples (2)

GSM8108895	TF ChIP-seq from whole organism (ENCLB781RCO)
GSM8108896	TF ChIP-seq from whole organism (ENCLB383BTV)

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE257942_ENCFF122SLX_peaks_and_background_as_input_for_IDR_ce11.bed.gz	749.9 Kb	(ftp)(http)	BED
GSE257942_ENCFF230REF_signal_of_unique_reads_ce11.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE257942_ENCFF246JCO_optimal_IDR_thresholded_peaks_ce11.bed.gz	42.0 Kb	(ftp)(http)	BED
GSE257942_ENCFF279RIG_peaks_and_background_as_input_for_IDR_ce11.bigBed	1.3 Mb	(ftp)(http)	BIGBED
GSE257942_ENCFF358AHZ_optimal_IDR_thresholded_peaks_ce10.bigBed	105.6 Kb	(ftp)(http)	BIGBED
GSE257942_ENCFF375HZA_control_normalized_signal_ce11.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE257942_ENCFF459ADI_optimal_IDR_thresholded_peaks_ce10.bed.gz	41.9 Kb	(ftp)(http)	BED
GSE257942_ENCFF473KWK_signal_of_unique_reads_ce10.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE257942_ENCFF533DUM_optimal_IDR_thresholded_peaks_ce11.bigBed	105.7 Kb	(ftp)(http)	BIGBED
GSE257942_ENCFF655WPV_read-depth_normalized_signal_ce11.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE257942_ENCFF714BQR_read-depth_normalized_signal_ce10.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE257942_ENCFF746WEW_peaks_and_background_as_input_for_IDR_ce10.bed.gz	750.1 Kb	(ftp)(http)	BED
GSE257942_ENCFF875ZMI_control_normalized_signal_ce10.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE257942_ENCFF932HKY_peaks_and_background_as_input_for_IDR_ce10.bigBed	1.3 Mb	(ftp)(http)	BIGBED
GSE257942_RAW.tar	123.3 Mb	(http)(custom)	TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA