GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Series GSE258519

Query DataSets for GSE258519

Status

Public on Feb 27, 2024

Title

TF ChIP-seq from whole organism (ENCSR944YBH)

Project

modENCODE

Organism

Caenorhabditis elegans

Experiment type

Genome binding/occupancy profiling by high throughput sequencing

Summary

ChIP-seq against eGFP-dpl-1 in L1 larva worms.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR944YBH/

Citation(s)

22955616

BioProject

PRJNA63463

Submission date

Feb 25, 2024

Last update date

Sep 02, 2024

Contact name

ENCODE DCC

E-mail(s)

[email protected]

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL13776

Illumina Genome Analyzer IIx (Caenorhabditis elegans)

Samples (2)

GSM8109916	TF ChIP-seq from whole organism (ENCLB989CDY)
GSM8109917	TF ChIP-seq from whole organism (ENCLB901RQV)

Relations

Reanalyzed by

GSE276166

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE258519_ENCFF019SLE_optimal_IDR_thresholded_peaks_ce10.bigBed	142.5 Kb	(ftp)(http)	BIGBED
GSE258519_ENCFF021ETT_peaks_and_background_as_input_for_IDR_ce11.bed.gz	595.6 Kb	(ftp)(http)	BED
GSE258519_ENCFF053LZN_control_normalized_signal_ce11.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE258519_ENCFF184WZO_peaks_and_background_as_input_for_IDR_ce11.bigBed	1.0 Mb	(ftp)(http)	BIGBED
GSE258519_ENCFF269AWI_control_normalized_signal_ce10.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE258519_ENCFF338WTQ_peaks_and_background_as_input_for_IDR_ce10.bigBed	1.0 Mb	(ftp)(http)	BIGBED
GSE258519_ENCFF359RZP_read-depth_normalized_signal_ce10.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE258519_ENCFF464VMO_optimal_IDR_thresholded_peaks_ce11.bed.gz	54.4 Kb	(ftp)(http)	BED
GSE258519_ENCFF553EBA_signal_of_unique_reads_ce10.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE258519_ENCFF631JQK_read-depth_normalized_signal_ce11.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE258519_ENCFF664OZN_optimal_IDR_thresholded_peaks_ce10.bed.gz	54.3 Kb	(ftp)(http)	BED
GSE258519_ENCFF818JHY_peaks_and_background_as_input_for_IDR_ce10.bed.gz	595.7 Kb	(ftp)(http)	BED
GSE258519_ENCFF881GNU_signal_of_unique_reads_ce11.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE258519_ENCFF896YBA_optimal_IDR_thresholded_peaks_ce11.bigBed	142.5 Kb	(ftp)(http)	BIGBED
GSE258519_RAW.tar	123.9 Mb	(http)(custom)	TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA