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Series GSE259279 Query DataSets for GSE259279
Status Public on Aug 02, 2024
Title Transcriptomic and proteomic spatial profiling of tertiary lymphoid aggregates in head and neck cancer reveal spatial tissue dynamics and profiles associated with immunotherapy response.
Organism Homo sapiens
Experiment type Other
Summary DSP RNA profling using the whole transcriptome atlas kit was performed on a tissue sample perior to immunotherapy from a patient with head and neck cancer.
 
Overall design Differential expression and gene set enrichment analyses were performed on the TLS and GC structures of a whole tissue to identify differences between the TLS and GC structures.
 
Contributor(s) Sadeghirad H, Kulasinghe A
Citation(s) 39049036
Submission date Feb 26, 2024
Last update date Aug 02, 2024
Contact name Habib Sadeghirad
E-mail(s) [email protected]
Phone 0451319292
Organization name The University of Queensland
Street address 37 Kent St, Woolloongabba, 37 Kent St, Woolloongabba
City Brisbane
State/province Queensland
ZIP/Postal code 4102
Country Australia
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (9)
GSM8368611 P1 | 001 | Full ROI
GSM8368612 P1 | 002 | Full ROI
GSM8368613 P1 | 003 | Full ROI
Relations
BioProject PRJNA1080577

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE259279_Hs_R_NGS_WTA_v1.0.pkc.gz 1.9 Mb (ftp)(http) PKC
GSE259279_hnscc_WTA_QC.csv.gz 282.4 Kb (ftp)(http) CSV
GSE259279_hnscc_normalised_QC.csv.gz 588.7 Kb (ftp)(http) CSV
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