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| Status |
Public on Dec 10, 2024 |
| Title |
An Improved Bacterial Single-cell RNA-seq Reveals Biofilm Heterogeneity |
| Organisms |
Staphylococcus aureus; Escherichia coli str. K-12 substr. MG1655; Caulobacter vibrioides NA1000 |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
Feb 28, 2024 |
| Last update date |
Dec 11, 2024 |
| Contact name |
Xiaodan Yan |
| E-mail(s) |
[email protected]
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| Phone |
13283874287
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| Organization name |
Wuhan University
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| Department |
Medical Research Institute
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| Street address |
Donghu Road, No. 115, Wuchang District,
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| City |
Wuhan |
| State/province |
Hubei Province |
| ZIP/Postal code |
430071 |
| Country |
China |
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| Platforms (3) |
| GPL26592 |
Illumina NovaSeq 6000 (Escherichia coli str. K-12 substr. MG1655) |
| GPL27158 |
Illumina NovaSeq 6000 (Staphylococcus aureus) |
| GPL34253 |
Illumina NovaSeq 6000 (Caulobacter vibrioides NA1000) |
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| Samples (20)
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| GSM8116272 |
3h, RNA-seq (1209-A) |
| GSM8117637 |
EC-24h-static-ΔΔ, replicate 1, scRNA-seq, High sequencing depth results (1214-7) |
| GSM8117638 |
EC-24h-static-ΔΔ, replicate 2, scRNA-seq, High sequencing depth results (1214-8) |
| GSM8117639 |
EC-3h-ΔΔ, replicate 1, scRNA-seq (0427-3) |
| GSM8117640 |
EC-3h-ΔΔ, replicate 2, scRNA-seq (0427-4) |
| GSM8117641 |
EC-3h, replicate 1, scRNA-seq (0615-1) |
| GSM8117642 |
EC-3h, replicate 2, scRNA-seq (0615-2) |
| GSM8117643 |
SA-3h, replicate 1, scRNA-seq (0119-E) |
| GSM8117644 |
SA-3h, replicate 2, scRNA-seq (0119-F) |
| GSM8117645 |
SA-3h-ΔΔ-replicate 1, scRNA-seq (0612-1) |
| GSM8117646 |
SA-3h-ΔΔ-replicate 2, scRNA-seq (0612-2) |
| GSM8117647 |
CC--3h, replicate 1, scRNA-seq (0225-1) |
| GSM8117648 |
CC--3h, replicate 2, scRNA-seq (0225-2) |
| GSM8117649 |
CC--3h, replicate 3, scRNA-seq (0225-3) |
| GSM8117650 |
CC-3h-ΔΔ-replicate 1, scRNA-seq (0225-4) |
| GSM8117651 |
CC-3h-ΔΔ-replicate 2, scRNA-seq (0225-5) |
| GSM8117652 |
CC-3h-ΔΔ-replicate 3, scRNA-seq (0225-6) |
| GSM8117653 |
SA-9h, scRNA-seq, High sequencing depth results (0609-7) |
| GSM8117654 |
CC-3h, scRNA-seq, High sequencing depth results (0129-3) |
| GSM8117655 |
EC-3h-ΔΔ, scRNA-seq, High sequencing depth results (0427-3_HSD) |
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| This SuperSeries is composed of the following SubSeries: |
| GSE259433 |
An Improved Bacterial Single-cell RNA-seq Reveals Biofilm Heterogeneity [RNA-seq] |
| GSE260457 |
An Improved Bacterial Single-cell RNA-seq Reveals Biofilm Heterogeneity [scRNA-seq] |
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| Relations |
| BioProject |
PRJNA1081803 |
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