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Series GSE260801 Query DataSets for GSE260801
Status Public on Oct 18, 2024
Title Spatially defined multicellular functional units in colorectal cancer revealed from single cell and spatial transcriptomics
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Other
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation missing Has this study been published? Please login to update or notify GEO.
NIH grant(s)
Grant ID Grant title Affiliation Name
RC2 DK114784 Systematic dissection of gut cellular circuits [at single cell resolution] THE BROAD INSTITUTE, INC. Aviv Regev
RM1 HG006193 Center for Cell Circuits THE BROAD INSTITUTE, INC. Aviv Regev
U24 CA180922 Trinity: Transcriptome assembly for genetic and functional analysis of cancer THE BROAD INSTITUTE, INC. Aviv Regev
HHMI_Regev_A Investigator Regev, Aviv Aviv Regev
R00 CA259511 Malignant Cell Engagement in Immune Circuits of Human Microsatellite-stable and Microsatellite-instable Colorectal Cancer J. DAVID GLADSTONE INSTITUTES Karin Pelka
R01 CA208756 (PQ3) The role of damaged DNA in inter-individual variation of tumor immunity THE BROAD INSTITUTE, INC. Nir Hacohen
R01 CA257523 Effects of inflammaging on intestinal epithelial cells and aspirin chemoprevention. MASSACHUSETTS GENERAL HOSPITAL Omer Yilmaz
R37 CA259363 Wnt signaling in obesity-associated colorectal cancer DUKE UNIVERSITY Jatin Roper
R21 CA256414 Inhibition of CaMKK2 sensitizes rectal cancers to radiation therapy DUKE UNIVERSITY Jatin Roper
R21 DK125911 Ultra-bright fluorescent nanoparticles for colorectal adenoma detection DUKE UNIVERSITY Jatin Roper
Submission date Mar 04, 2024
Last update date Oct 19, 2024
Contact name Simon Mages
Organization name Broad Institute
Lab Regev Lab
Street address 415 Main St.
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
 
Platforms (2)
GPL21273 HiSeq X Ten (Mus musculus)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (25)
GSM8124718 AV10b_P
GSM8124719 AV10a_P
GSM8124720 AV11a_P
This SuperSeries is composed of the following SubSeries:
GSE260797 Spatially defined multicellular functional units in colorectal cancer revealed from single cell and spatial transcriptomics - Slide-Seq
GSE260798 Spatially defined multicellular functional units in colorectal cancer revealed from single cell and spatial transcriptomics - scRNAseq v2
GSE260799 Spatially defined multicellular functional units in colorectal cancer revealed from single cell and spatial transcriptomics - scRNAseq v2 with cell multiplexing
Relations
BioProject PRJNA1083516

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE260801_RAW.tar 1.6 Gb (http)(custom) TAR (of CSV, MTX, TAR, TSV, TXT)
GSE260801_scRNAseq.h5ad.gz 240.7 Mb (ftp)(http) H5AD
GSE260801_slideseq.h5ad.gz 339.1 Mb (ftp)(http) H5AD
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