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Series GSE263496 Query DataSets for GSE263496
Status Public on Jun 01, 2024
Title Deciphering Mycobacterium tuberculosis glycan epitopes through clustering of human polyclonal and isolating novel monoclonal antibodies I
Platform organism synthetic construct
Sample organism Homo sapiens
Experiment type Protein profiling by protein array
Summary The immunomodulatory mycobacterial surface antigen lipoarabinomannan (LAM) with its immunogenic glycan component arabinomannan (AM) facilitates Mycobacterium tuberculosis’ (Mtb) escape from the host’s immune response. Some but not all antibodies against AM can protect against TB. To better understand which of AM’s structures to target, we must first identify the spectrum of its epitopes.
We here used synthetic AM oligosaccharide motifs to deplete sera from subjects along the spectrum of Mtb infection. Performing cluster analysis, we were able to predict AM’s immunogenic structures and delineate how antibody reactivity to them is influenced by Mtb infection states.
 
Overall design Human plasma samples were tested for direct binding to 30 synthetic oligosaccharides
 
Contributor(s) Chen T, Liu Y, Lowary TL, Achkar JM
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Submission date Apr 08, 2024
Last update date Jun 01, 2024
Contact name Jacqueline Achkar
E-mail(s) [email protected]
Organization name Albert Einstein College of Medicine
Street address 1300 Morris Park Ave
City Bronx
State/province NY
ZIP/Postal code 10461
Country USA
 
Platforms (1)
GPL34369 LAM Subarray 30 - Antigens
Samples (107)
GSM8193552 IT05_Biodpl
GSM8193553 IT05_OS1dpl
GSM8193554 IT05_OS6dpl
Relations
BioProject PRJNA1097647

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE263496_B07.gpr.gz 117.1 Kb (ftp)(http) GPR
GSE263496_B08.gpr.gz 130.6 Kb (ftp)(http) GPR
GSE263496_B09.gpr.gz 152.1 Kb (ftp)(http) GPR
GSE263496_B10.gpr.gz 165.5 Kb (ftp)(http) GPR
GSE263496_B11.gpr.gz 169.7 Kb (ftp)(http) GPR
GSE263496_D01.gpr.gz 109.1 Kb (ftp)(http) GPR
GSE263496_Human_samples_30_glycan_array_location.xlsx 13.7 Kb (ftp)(http) XLSX
Raw data are available in SRA
Processed data included within Sample table

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