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| Status |
Public on Jun 22, 2011 |
| Title |
Transcriptional Regulation of Anabaena 7120 response to Nitrogen Deprivation |
| Organism |
Nostoc sp. PCC 7120 = FACHB-418 |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Here, we report the transcriptome of Anabaena sp. strain 7120, a cyanobacterium that forms specialized nitrogen-fixing cells called heterocysts. Our data suggests that cyanobacteria frequently have more complex transcripts than thought, with large 5' UTRs, numerous antisense transcripts, and multiple transcriptional start sites or processing sites.
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| Overall design |
Four samples of total filament RNA were sequenced with Illumina 40bp reads using directional RNA sequencing (see the Illumina small RNA prep protocol). The samples are 0hr (vegetative cells grown in the presence of ammonia) and 6hr, 12hr, and 21hr cells (after nitrogen step down).
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| Contributor(s) |
Flaherty BL, Van Nieuwerburgh F, Head SR, Golden JW |
| Citation(s) |
21711558 |
| |
| Submission date |
Jan 14, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
James W Golden |
| E-mail(s) |
[email protected]
|
| Phone |
8585349555
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| Organization name |
UCSD
|
| Department |
Biological Sciences
|
| Lab |
James Golden
|
| Street address |
9500 Gilman Dr. MC 0116
|
| City |
La Jolla |
| State/province |
CA |
| ZIP/Postal code |
92093 |
| Country |
USA |
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| Platforms (1) |
| GPL11645 |
Illumina Genome Analyzer II (Nostoc sp. PCC 7120) |
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| Samples (4)
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| Relations |
| SRA |
SRP005431 |
| BioProject |
PRJNA136453 |
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