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Series GSE268602 Query DataSets for GSE268602
Status Public on Jul 01, 2024
Title Molecular gatekeepers: how peptide maturation molecules coordinate cell-cell communication in Streptococcus pneumoniae
Organism Streptococcus pneumoniae
Experiment type Expression profiling by high throughput sequencing
Summary Cell-cell communication systems enable populations to regulate behavior via modifications in gene expression. In Gram-positive bacteria, these systems are often composed of secreted, signaling peptides that disperse across the population and interact with cognate transcriptional regulators. While cells generally possess multiple such systems, there is a gap in knowledge regarding molecular mechanisms that coordinate these systems to allow for optimization of phenotypic responses. The human pathogen Streptococcus pneumoniae (Spn) encodes several cell-cell communication systems, notably multiple members of the Rgg/SHP and the Tpr/Phr family. Previous studies have characterized their individual regulatory networks and established their importance in Spn virulence and until now, these two signaling families were thought to work independently. Our study provides the molecular link between Rgg/SHP and TprA/PhrA systems by demonstrating that conserved peptide maturation molecules are integral to the coordination of both systems in Spn. We reveal that the ABC transporter PptAB and the transmembrane enzyme Eep display a dual mode of action, simultaneously activating the Rgg/SHP systems and repressing the TprA/PhrA system. Specifically, they regulate the respective precursor peptides (SHP and PhrA) before these leave the cell. This dual function leads to temporal coordination of these systems producing an overlap between their respective regulons during host cell infection. Thus, we have identified a single molecular mechanism that targets diverse cell-cell communication systems. Moreover, the signaling systems and peptide maturation molecules are also encoded by closely related species and other Gram-positive bacteria suggesting this coordination mechanism may have applications across species boundaries.
 
Overall design We employed RNA-seq to compare gene expression between WT Spn and a deletion of the pptAB transporter. Deletion of the phrA signaling peptide was used as control for lack of signaling. A double deletion of pptAB and of the peptide importer amiA-F was used to capture a condition where extracellular PhrA is not imported.
 
Contributor(s) Mueller Brown K, Wang D, Jia Q, Rosch J, Hiller NL
Citation(s) 38963762
Submission date May 29, 2024
Last update date Sep 12, 2024
Contact name N. Luisa Hiller
E-mail(s) [email protected]
Phone 412-268-5994
Organization name Carnegie Mellon University
Department Biological Sciences
Street address 4400 Fifth Ave
City Pittsburgh
State/province PA
ZIP/Postal code 15213
Country USA
 
Platforms (1)
GPL28680 Illumina NovaSeq 6000 (Streptococcus pneumoniae)
Samples (8)
GSM8295171 D39_WT_planktonic_biol-rep-1
GSM8295172 D39_WT_planktonic_biol-rep-2
GSM8295173 D39_D-pptAB_planktonic_biol-rep-1
Relations
BioProject PRJNA1117890

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE268602_D39_WT_D-pptAB_D-phrA_D-pptAB-D-ami_RNA-seq_raw-counts.csv.gz 68.7 Kb (ftp)(http) CSV
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Raw data are available in SRA

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