|
| Status |
Public on Jul 02, 2024 |
| Title |
Identification of targets for the transcription factor EFL-3 in the C. elegans epidermis |
| Organism |
Caenorhabditis elegans |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
In this study we employ NanoDam to identify targets within the epidermis for the transcription factor EFL-3 that we identified as a key epidermal development regulator.
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| Overall design |
Identification of EFL-3 genome-wide binding by epidermis-specific expression of GFP-nanobody:Dam fusion combined with EFL-3:GFP knock-in in C. elegans. Two different configurations of the GFP-nanobody:dam fusions are included (C-terminal and N-terminal fusions). Samples containing the GFP-nanobody:dam fusion only constitute control samples.
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| Contributor(s) |
Ferrando-Marco M, Barkoulas M |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Jun 27, 2024 |
| Last update date |
Jul 02, 2024 |
| Contact name |
Michalis Barkoulas |
| E-mail(s) |
[email protected]
|
| Organization name |
Imperial College London
|
| Department |
Life Sciences
|
| Street address |
Imperial College Road
|
| City |
London |
| ZIP/Postal code |
SW7 2AZ |
| Country |
United Kingdom |
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| Platforms (1) |
| GPL22765 |
Illumina HiSeq 4000 (Caenorhabditis elegans) |
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| Samples (8)
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| Relations |
| BioProject |
PRJNA1129117 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE270959_C-tGFP-vs-Dam.gatc.chr.averagedQN-FDR0.05.peaks.valued.bed.gz |
14.0 Kb |
(ftp)(http) |
BED |
| GSE270959_C-tGFP-vs-Dam.gatc.chr.averagedQN.bedgraph.gz |
2.9 Mb |
(ftp)(http) |
BEDGRAPH |
| GSE270959_GFP5-vs-Dam1.gatc.bedgraph.gz |
3.7 Mb |
(ftp)(http) |
BEDGRAPH |
| GSE270959_GFP5-vs-Dam2.gatc.bedgraph.gz |
3.7 Mb |
(ftp)(http) |
BEDGRAPH |
| GSE270959_GFP6-vs-Dam1.gatc.bedgraph.gz |
3.7 Mb |
(ftp)(http) |
BEDGRAPH |
| GSE270959_GFP6-vs-Dam2.gatc.bedgraph.gz |
3.7 Mb |
(ftp)(http) |
BEDGRAPH |
| GSE270959_GFP7-vs-Dam3.gatc.bedgraph.gz |
3.7 Mb |
(ftp)(http) |
BEDGRAPH |
| GSE270959_GFP7-vs-Dam4.gatc.bedgraph.gz |
3.7 Mb |
(ftp)(http) |
BEDGRAPH |
| GSE270959_GFP8-vs-Dam3.gatc.bedgraph.gz |
3.7 Mb |
(ftp)(http) |
BEDGRAPH |
| GSE270959_GFP8-vs-Dam4.gatc.bedgraph.gz |
3.7 Mb |
(ftp)(http) |
BEDGRAPH |
| GSE270959_N-tGFP-vs-Dam.gatc.chr.averagedQN-FDR0.05.peaks.valued.bed.gz |
12.9 Kb |
(ftp)(http) |
BED |
| GSE270959_N-tGFP-vs-Dam.gatc.chr.averagedQN.bedgraph.gz |
2.9 Mb |
(ftp)(http) |
BEDGRAPH |
SRA Run Selector |
| Raw data are available in SRA |
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