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Series GSE29009 Query DataSets for GSE29009
Status Public on Dec 29, 2011
Title In vitro knockdown of LAMP3 leads to down-regulation of interferon-inducible genes
Organism Homo sapiens
Experiment type Expression profiling by array
Summary We identified LAMP3 as a key driver gene of anti-viral subnetwork genes in cervical cancer patients. Therefore we tested this prediction using an in vitro system. This is the first direct demonstration of LAMP3 regulatory role in interferon-dependent immune response.
 
Overall design We first pretreated HeLa cells with control siRNA or LAMP3 siRNA overnight and then added 1 ng/ml of interferon alpha to the cultures for 3 and 4 days
 
Contributor(s) Shulzhenko N, Morgun A
Citation(s) 23651994
Submission date May 02, 2011
Last update date Aug 13, 2018
Contact name Natalia Shulzhenko
E-mail(s) [email protected], [email protected]
Organization name NIAID, USA
Department Laboratory of Cellular and Molecular Immunology
Lab Ghost lab
Street address 9000 Rockville Pike
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platforms (1)
GPL10558 Illumina HumanHT-12 V4.0 expression beadchip
Samples (8)
GSM718736 Lamp3 KD 3d 1
GSM718737 Lamp3 KD 3d 2
GSM718738 Lamp3 KD 4d 1
Relations
BioProject PRJNA140461

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE29009_RAW.tar 33.2 Mb (http)(custom) TAR (of TXT)
GSE29009_normalized.txt.gz 2.1 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record

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