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| Status |
Public on Oct 31, 2012 |
| Title |
First Development, Characterization and Experimental Validation of sunflower (Helianthus annuus L.) 44 K Agilent gene expression microarray |
| Organism |
Helianthus annuus |
| Experiment type |
Expression profiling by array
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| Summary |
We describe the design, cleaning and annotation of the gene index for sunflower and the construction of the microarray platform. In addition, we validate this tool by means of the analysis of global changes in gene expression profiles in response to water deficit as a physiological event which induces senescence, taken as a model experiment, for which reference genes have also been identified and validated (Fernandez et al., 2011). Our results show that Helianthus annuus L. microarray is suitable for a functional genomics approach across many different possible treatments and conditions to be carried out. Actually, it is already being used for other experiments showing a precise and accurate level of trustability along different gene expression profiles.
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| Overall design |
Analysis of global changes in gene expression profiles in response to water deficit, 44K Agilent one color array
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| Contributor(s) |
Fernandez P, Soria M, Blesa D, Di Rienzo J, Moschen S, Principi D, Dosio GA, Aguirrezabal LA, Garcia F, Conesa A, Hopp HE, Dopazo J, Heinz RA, Paniego N |
| Citation(s) |
23110046 |
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| Submission date |
May 19, 2011 |
| Last update date |
Jan 31, 2013 |
| Contact name |
Paula Fernandez |
| E-mail(s) |
[email protected]
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| Organization name |
INTA Castelar
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| Street address |
N. Repetto y Los Reseros S/N
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| City |
Castelar |
| State/province |
Buenos Aires |
| ZIP/Postal code |
1712 |
| Country |
Argentina |
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| Platforms (1) |
| GPL13610 |
Agilent-027480 INTA_CIPF_Girasol (Probe Name version) |
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| Samples (8)
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| Relations |
| BioProject |
PRJNA140159 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE29390_RAW.tar |
17.5 Mb |
(http)(custom) |
TAR (of TXT) |
| Processed data included within Sample table |
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