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| Status |
Public on Aug 22, 2011 |
| Title |
Expression data from H2-producing Rhodobacter sphaeroides cultures fed different organic substrates |
| Platform organism |
Cereibacter sphaeroides 2.4.1 |
| Sample organism |
Cereibacter sphaeroides |
| Experiment type |
Expression profiling by array
|
| Summary |
Rhodobacter sphaeroides produces hydrogen gas (H2) via its nitrogenase enzyme during photoheterotrophic growth under nitrogen-limited conditions. We find that cells produce different amounts of H2 and show different growth rates, depending on the organic substrate provided (lactate, succinate, glucose, xylose, or glycerol).
We used global transcript analyses to determine what genes are involved in the onset of H2 production, and those that lead to different H2 production capacities in cells fed different organic substrates.
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| Overall design |
Growth and real-time H2 production were followed for photoheterotrophically grown Rhodobacter sphaeroides cultures (19 mL test tube cultures) fed one of five different organic substrates (lactate, succinate, glucose, xylose, or glycerol) and provided glutamate as the sole nitrogen source. Cells were harvested for RNA extraction during early post-exponential growth, at points near the maximum H2 production rates of the cultures. Non-H2-producing cells (500 mL cultures) fed succinate and provided NH4+ as nitrogen source were also harvested for RNA extraction as reference samples. At least two samples for every given set of conditions were analyzed.
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| Contributor(s) |
Kontur WS, Ziegelhoffer EC, Spero MA, Imam S, Noguera DR, Donohue TJ |
| Citation(s) |
21856820 |
| |
| Submission date |
Jun 08, 2011 |
| Last update date |
Apr 26, 2014 |
| Contact name |
Timothy Donohue |
| E-mail(s) |
[email protected]
|
| Phone |
608-262-4663
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| Fax |
608-890-2270
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| Organization name |
University of Wisconsin-Madison
|
| Department |
Department of Bacteriology
|
| Street address |
1550 Linden Drive
|
| City |
Madison |
| State/province |
Wisconsin |
| ZIP/Postal code |
53706 |
| Country |
USA |
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| Platforms (1) |
| GPL162 |
[uwyRhodo1a] Rhodobacter sphaeroides 2.4.1 GeneChip |
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| Samples (18)
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| GSM738839 |
H2-producing_Rhodobacter_lactate_rep1 |
| GSM738840 |
H2-producing_Rhodobacter_lactate_rep2 |
| GSM738841 |
H2-producing_Rhodobacter_lactate_rep3 |
| GSM738842 |
H2-producing_Rhodobacter_succinate_rep1 |
| GSM738843 |
H2-producing_Rhodobacter_succinate_rep2 |
| GSM738844 |
H2-producing_Rhodobacter_succinate_rep3 |
| GSM738845 |
H2-producing_Rhodobacter_glucose_rep1 |
| GSM738846 |
H2-producing_Rhodobacter_glucose_rep2 |
| GSM738847 |
H2-producing_Rhodobacter_glucose_rep3 |
| GSM738848 |
H2-producing_Rhodobacter_glucose_rep4 |
| GSM738849 |
H2-producing_Rhodobacter_xylose_rep1 |
| GSM738850 |
H2-producing_Rhodobacter_xylose_rep2 |
| GSM738851 |
H2-producing_Rhodobacter_xylose_rep3 |
| GSM738852 |
H2-producing_Rhodobacter_xylose_rep4 |
| GSM738853 |
H2-producing_Rhodobacter_glycerol_rep1 |
| GSM738854 |
H2-producing_Rhodobacter_glycerol_rep2 |
| GSM738855 |
Non-H2-producing_Rhodobacter_succinate_Ref_rep1 |
| GSM738856 |
Non-H2-producing_Rhodobacter_succinate_Ref_rep2 |
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| Relations |
| BioProject |
PRJNA140925 |
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