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Series GSE30360 Query DataSets for GSE30360
Status Public on Sep 29, 2011
Title Vreteno, a gonad-specific protein, is essential for germline development and primary piRNA biogenesis in Drosophila
Organism Drosophila melanogaster
Experiment type Expression profiling by array
Summary In Drosophila, Piwi proteins associate with Piwi-interacting RNAs (piRNAs) and protect the germline genome by silencing mobile genetic elements. This defense system acts in germline and gonadal somatic tissue to preserve germline development. Genetic control for these silencing pathways varies greatly between tissues of the gonad. Here, we identified Vreteno (Vret), a novel gonad-specific protein essential for germline development. Vret is required for piRNA-based transposon regulation in both germline and somatic gonadal tissues. We show that Vret, which contains Tudor domains, associates physically with Piwi and Aubergine (Aub), stabilizing these proteins via a gonad-specific mechanism, absent in other fly tissues. In the absence of vret, Piwi-bound piRNAs are lost without changes in piRNA precursor transcript production, supporting a role for Vret in primary piRNA biogenesis. In the germline, piRNAs can engage in an Aub/Argonaute 3 (AGO3)-dependent amplification in the absence of Vret, suggesting that Vret function can distinguish between primary piRNAs loaded into Piwi/Aub complexes and piRNAs engaged in the amplification cycle. We propose that Vret acts at an early step in primary piRNA processing where it plays an essential role in transposon regulation.
These studies show that vreteno (vret) has a role in germline development and primary piRNA regulation in Drosophila.
 
Overall design Transposable element expression profiles from Drosophila ovaries mutant for vreteno, piwi and aubergine were compared using genome-wide mRNA expression profiling by Affymetrix GeneChip arrays (Drosophila 2.0). Key targets were validated by qPCR experiments.
 
Contributor(s) Zamparini AL, Davis MY, Malone CD, Vieira E, Zavadil J, Sachidanandam R, Hannon GJ, Lehmann R
Citation(s) 21831924
Submission date Jul 01, 2011
Last update date Aug 28, 2018
Contact name Jiri ZAVADIL
E-mail(s) [email protected]
Phone +33648065733
Organization name IARC WHO
Street address 150 COURS ALBERT THOMAS
City LYON
State/province Other
ZIP/Postal code 69008
Country France
 
Platforms (1)
GPL1322 [Drosophila_2] Affymetrix Drosophila Genome 2.0 Array
Samples (12)
GSM753468 vret heterozygous control ovaries, repeat 1
GSM753469 vret heterozygous control ovaries, repeat 2
GSM753470 vret homozygous mutant ovaries, repeat 1
Relations
BioProject PRJNA143637

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE30360_RAW.tar 24.2 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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