|
| Status |
Public on Nov 01, 2011 |
| Title |
Sequentially acting Sox transcription factors in neural lineage development [ChIP-seq] |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
We report sequential binding but unique functions of different Sox transcription factors during distinct stages of neural differentiation
|
| |
|
| Overall design |
Examination of genome-wide Sox2, Sox3 and Sox11 transcription factor binding during different stages of neurogenesis.
|
| |
|
| Contributor(s) |
Bergsland M, Ramsköld D, Muhr J, Sandberg R |
| Citation(s) |
22085726 |
| |
| Submission date |
Oct 18, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
Rickard Sandberg |
| E-mail(s) |
[email protected]
|
| Organization name |
Karolinska Institutet
|
| Department |
Department of Cell and Molecular Biology
|
| Street address |
Berzelius vag 35
|
| City |
Stockholm |
| ZIP/Postal code |
17177 |
| Country |
Sweden |
| |
|
| Platforms (3) |
| GPL9250 |
Illumina Genome Analyzer II (Mus musculus) |
| GPL11002 |
Illumina Genome Analyzer IIx (Mus musculus) |
| GPL13112 |
Illumina HiSeq 2000 (Mus musculus) |
|
| Samples (15)
|
| GSM818936 |
Sox3 ChIP-Seq in neural progenitor cells, biol repl 1 |
| GSM818937 |
Sox3 ChIP-Seq in neural progenitor cells, biol repl 2 |
| GSM818938 |
Sox3 ChIP-Seq in neural progenitor cells, biol repl 3 |
| GSM818939 |
Sox2 ChIP-Seq in neural progenitor cells, biol repl 1 |
| GSM818940 |
Sox2 ChIP-Seq in neural progenitor cells, biol repl 2 |
| GSM818941 |
Sox2 ChIP-Seq in neural progenitor cells, biol repl 3 |
| GSM818942 |
Sox11 ChIP-Seq in early formed neurons, biol repl 1 |
| GSM818943 |
Sox11 ChIP-Seq in early formed neurons, biol repl 2 |
| GSM818944 |
Sox11 ChIP-Seq in early formed neurons, biol repl 3 |
| GSM818945 |
Control IgG ChIP-Seq in early formed neurons |
| GSM818946 |
H3K4me3 ChIP-Seq in Sox3-transfected C2C12 cells |
| GSM818947 |
H3K4me3 ChIP-Seq in GFP-transfected C2C12 cells |
| GSM818948 |
H3K27me3 ChIP-Seq in Sox3-transfected C2C12 cells |
| GSM818949 |
H3K27me3 ChIP-Seq in GFP-transfected C2C12 cells |
| GSM818950 |
Sox3 ChIP-Seq in Sox3-transfected C2C12 cells |
|
| This SubSeries is part of SuperSeries: |
| GSE33024 |
Sequentially acting Sox transcription factors in neural lineage development |
|
| Relations |
| SRA |
SRP009040 |
| BioProject |
PRJNA154419 |
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