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Series GSE34836 Query DataSets for GSE34836
Status Public on Jun 18, 2012
Title Effects of vitamin B12 on the gene expression of PAO1 under anaerobic growth conditions
Platform organism Pseudomonas aeruginosa
Sample organism Pseudomonas aeruginosa PAO1
Experiment type Expression profiling by array
Summary Pseudomonas aeruginosa undergoes cell elongation and forms robust biofilms during anaerobic respiratory growth using nitrate (NO3-) as an alternative electron acceptor. Understanding the mechanism of cell shape change induced upon anaerobiosis is crucial to the development of effective treatments against P. aeruginosa biofilm infection. Anaerobic growth of PAO1 reached higher cell density in the presence of vitamin B12, an essential coenzyme of class II ribonucleotide reductase. In addition, cell morphology returned to a normal rod shape. These results suggest that vitamin B12, the production of which was suppressed during anaerobic growth, can restore cellular machineries for DNA replication and therefore facilitate better anaerobic growth of P. aeruginosa with normal cell division.
We used microarray to elucidate the global gene expression profiles underlying vitamin B12-induced changes in bacterial cell shape and growth-associated properties.
 
Overall design Gene expression profiles of PAO1 grown in LBN (LB+NO3-) or LBN supplemented with 1 microM vitamin B12 are compared.
 
Contributor(s) Yoon S
Citation(s) 22371376
Submission date Jan 04, 2012
Last update date Jul 06, 2016
Contact name Sang Sun Yoon
E-mail(s) [email protected]
Phone +82-2-2228-1824
Fax +82-2-392-7088
URL http://www.yuhs-microbiology.org
Organization name Yonsei University College of Medicine
Street address 250 Seongsanno, Seodaemun-gu
City Seoul
ZIP/Postal code 120-852
Country South Korea
 
Platforms (1)
GPL84 [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array
Samples (2)
GSM856031 PAO1_LBN
GSM856032 PAO1_LBN+B12
Relations
BioProject PRJNA150221

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE34836_RAW.tar 1.3 Mb (http)(custom) TAR (of CEL)
GSE34836_log2_ratios.txt.gz 100.5 Kb (ftp)(http) TXT
Processed data included within Sample table

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