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Series GSE35347 Query DataSets for GSE35347
Status Public on May 28, 2012
Title An induced pluripotent stem cell model for ataxia telangiectasia
Organism Homo sapiens
Experiment type Expression profiling by array
Summary The difficulty associated with generating induced pluripotent stem cells (iPSC) from patients with chromosomal instability syndromes suggests the cellular DNA damage response poses a barrier to reprogramming. Here we demonstrate that fibroblasts from patients with ataxia-telangiectasia (A-T) can be reprogrammed to bona-fide iPSC, albeit at a reduced efficiency. A-T iPSC display defective radiation-induced signaling, radiosensitivity and cell cycle checkpoint defects. Bioinformatic analysis of gene expression in the A-T iPSC identifies abnormalities in DNA damage signaling pathways as well as changes in mitochondrial and pentose phosphate pathways. A-T iPSC can be differentiated into functional neurons and thus represent a suitable model system to investigate A-T associated neurodegeneration. Collectively our data show that iPSC can be generated from a chromosomal instability syndrome and that these cells can be used to discover early developmental consequences of ATM deficiency, such as altered mitochondrial function, that may be relevant to A-T pathogenesis and amenable to therapeutic intervention.
 
Overall design Three different cell types: fibroblasts, human embyronic stem cells, and induced pluripotent stem cells with heterozygote, homozygote A-T compared to normal samples.
 
Contributor(s) Nayler S
Citation(s) 23197857
Sam Nayler, Magtouf Gatei, Sergei Kozlov, Richard Gatti, Jessica C. Mar, Christine A. Wells, Martin Lavin, and Ernst Wolvetang. 2012. Induced Pluripotent Stem Cells from Ataxia-Telangiectasia Recapitulate the Cellular Phenotype. Stem Cells Trans Med. Jul 1: 523 - 535. doi: 10.5966/sctm.2012-0024
Submission date Jan 25, 2012
Last update date Aug 13, 2018
Contact name Othmar Korn
Organization name Australian Institute for Bioengineering and Nanotechnology
Street address University of Queensland
City St. Lucia
State/province Queensland
ZIP/Postal code 4067
Country Australia
 
Platforms (1)
GPL10558 Illumina HumanHT-12 V4.0 expression beadchip
Samples (33)
GSM866576 iPS1 rep1
GSM866577 iPS1 rep2
GSM866578 iPS1 rep3
Relations
BioProject PRJNA152721

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE35347_RAW.tar 26.2 Mb (http)(custom) TAR
GSE35347_non-normalized.txt.gz 19.7 Mb (ftp)(http) TXT
Processed data included within Sample table

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