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| Status |
Public on Feb 16, 2012 |
| Title |
ChIP-chip of RNA Polymerase (RNAP) and RpoD in Salmonella enterica serovar Typhimurium strain SL1344 |
| Platform organism |
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 |
| Sample organism |
Salmonella enterica subsp. enterica serovar Typhimurium |
| Experiment type |
Genome binding/occupancy profiling by genome tiling array
|
| Summary |
ChIP-on-chip analysis of RNAP and RpoD binding to the Salmonella enterica serovar Typhimurium chromosome demonstrated a high degree of overlap between RNAP and RpoD binding and provided us with important insights into the global distribution of these factors. Furthermore this data was correlated with information on the location of 1873 transcription start sites identified by RNA-Seq technology, thereby providing a detailed transcriptional map of Salmonella Typhimurium.
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| |
|
| Overall design |
Analysis of RNAP, RNAP-Rifampicin and and RpoD binding in Luria Broth (LB)
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| |
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| Contributor(s) |
Dillon SC, Cameron AD, Kroger C, Hokamp K, Dorman CJ, Hinton JC |
| Citation(s) |
22538806 |
| |
| Submission date |
Feb 14, 2012 |
| Last update date |
May 01, 2012 |
| Contact name |
Shane Dillon |
| E-mail(s) |
[email protected]
|
| Organization name |
Moyne Institute of Preventive Medicine
|
| Department |
Department of Microbiology
|
| Street address |
Trinity College
|
| City |
Dublin |
| ZIP/Postal code |
Dublin 2 |
| Country |
Ireland |
| |
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| Platforms (1) |
| GPL10008 |
Oxford Gene Technology Chip2 Salmonella typhimurium microarray SL1344 strain product code: 010021 |
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| Samples (5)
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| Relations |
| BioProject |
PRJNA151889 |
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