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| Status |
Public on Jul 12, 2012 |
| Title |
Transcript profiling of Arabidopsis msh1 mutants |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by array
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| Summary |
The Arabidopsis msh1 mutant show various growth phenotype. We use microarray analysis to characterize gene expression pattern for two of the phenotypes - variegation and stunted growth.
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| Overall design |
Wild type and msh1 RNAi variegated and stunted tissues were collected for RNA extration and hybridization on Affymetrix.
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| Contributor(s) |
Xu Y, Mackenzie SA |
| Citation(s) |
22496509 |
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| Submission date |
Feb 16, 2012 |
| Last update date |
Jun 12, 2017 |
| Contact name |
Ying-Zhi Xu |
| E-mail(s) |
[email protected]
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| Phone |
402-472-6998
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| Organization name |
University of Nebraska
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| Department |
Center for Plant Science Innovation
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| Lab |
Sally Mackenzie
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| Street address |
1901 Vine St.
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| City |
Lincoln |
| State/province |
NE |
| ZIP/Postal code |
68588 |
| Country |
USA |
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| Platforms (1) |
| GPL198 |
[ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array |
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| Samples (9)
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| GSM877108 |
msh1,variegation, Col-0, biological rep 1 |
| GSM877109 |
msh1,variegation, Col-0, biological rep 2 |
| GSM877110 |
msh1,variegation, Col-0, biological rep 3 |
| GSM877111 |
msh1,stunt,biological rep 1 |
| GSM877112 |
msh1,stunt,biological rep 2 |
| GSM877113 |
msh1,stunt,biological rep 3 |
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| Relations |
| BioProject |
PRJNA151951 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE35893_RAW.tar |
16.8 Mb |
(http)(custom) |
TAR (of CEL) |
| Processed data included within Sample table |
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