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| Status |
Public on Oct 10, 2012 |
| Title |
Comparison of the genomic structures and transcription between S. cerevisiae strains ZTW1 and ZGR3 |
| Organism |
Saccharomyces cerevisiae |
| Experiment type |
Genome variation profiling by genome tiling array
Expression profiling by high throughput sequencing
|
| Summary |
To determine how does genomic structural variation changed the phenotypes of yeast. aCGH and RNA-Seq were performed to reveal the differeces in the genomic structures and transcription of ZTW1 and ZGR3.
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
In the aCGH experiment, strain BYZ1 (S288c background) was used as the control. In the RNA-Seq experiment, the total RNA from three independent cultured cells of each yeast strain was extracted. Three cDNA libraries of one sample were mixed before sequencing.
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| |
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| Contributor(s) |
Zheng D, Wu X |
| Citation(s) |
24346281 |
| |
| Submission date |
Sep 19, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Daoqiong Zheng |
| E-mail(s) |
[email protected]
|
| Phone |
86 571 88206636
|
| Organization name |
College of Life Sciences, Zhejiang University
|
| Department |
Institute of Microbiology
|
| Street address |
866 Yuhangtang Road
|
| City |
Hangzhou |
| State/province |
Zhejiang |
| ZIP/Postal code |
310058 |
| Country |
China |
| |
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| Platforms (2) |
| GPL7699 |
NimbleGen 385k S. cerevisiae 32bp tiling array |
| GPL13821 |
Illumina HiSeq 2000 (Saccharomyces cerevisiae) |
|
| Samples (3) |
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| This SuperSeries is composed of the following SubSeries: |
| GSE40905 |
Transcription profile analysis of S. cerevisiae ZTW1 wild-type and mutant strains |
| GSE41108 |
Comparison of the genomic structures between S. cerevisiae strains ZGR3 and BYZ1 |
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| Relations |
| BioProject |
PRJNA175824 |
