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GEO accession:
Series GSE42119
Query DataSets for GSE42119
Status
Public on Nov 08, 2012
Title
DNA methylation changes are a late event in Acute Promyelocytic Leukemia and coincide with loss of transcription factor binding
Organisms
Homo sapiens
;
Mus musculus
Experiment type
Methylation profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Methylation profiling by genome tiling array
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
23152544
Submission date
Nov 07, 2012
Last update date
May 15, 2019
Contact name
Christian Rohde
E-mail(s)
[email protected]
Organization name
Heidelberg University
Lab
Molecular Hematology and Oncology
Street address
Im Neuenheimer Feld 410
City
Heidelberg
ZIP/Postal code
69120
Country
Germany
Platforms (4)
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GPL11154
Illumina HiSeq 2000 (Homo sapiens)
GPL13534
Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
GPL15456
Illumina HiScanSQ (Homo sapiens)
GPL16173
Illumina HiScanSQ (Mus musculus)
Samples (61)
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GSM1031192
RRBS primary diagnosis APL_5
GSM1031193
RRBS primary diagnosis APL_10545
GSM1031194
RRBS primary diagnosis APL_10892
GSM1031195
RRBS primary diagnosis APL_7
GSM1031196
RRBS primary diagnosis APL_9
GSM1031197
RRBS primary diagnosis APL_14
GSM1031198
RRBS primary diagnosis APL_2
GSM1031199
RRBS primary diagnosis APL_8503
GSM1031200
RRBS primary diagnosis APL_19
GSM1031201
RRBS primary diagnosis APL_9882
GSM1031202
RRBS primary diagnosis APL_7717
GSM1031203
RRBS primary diagnosis APL_10759
GSM1031204
RRBS primary diagnosis APL_15
GSM1031205
RRBS primary diagnosis APL_8
GSM1031206
RRBS primary diagnosis APL_1
GSM1031207
RRBS primary diagnosis APL_11
GSM1031208
RRBS primary diagnosis APL_3
GSM1031209
RRBS primary diagnosis APL_8452
GSM1031210
RRBS hematopoietic progenitor cells CD34_190511
GSM1031211
RRBS hematopoietic progenitor cells CD34_260511
GSM1031212
RRBS hematopoietic progenitor cells CD34_010611
GSM1031213
RRBS hematopoietic progenitor cells CD34_300611
GSM1031214
RRBS hematopoietic progenitor cells Promyelocyte_240511
GSM1031215
RRBS hematopoietic progenitor cells Promyelocyte_310511
GSM1031216
RRBS hematopoietic progenitor cells Promyelocte_060611
GSM1031217
RRBS hematopoietic progenitor cells Promyelocyte_050711
GSM1031218
RRBS remission bone marrow APL_10961
GSM1031219
RRBS remission bone marrow APL_11624
GSM1031220
RRBS remission bone marrow APL_5894
GSM1031221
RRBS remission bone marrow APL_6
GSM1031222
RRBS remission bone marrow APL_11523
GSM1031223
RRBS remission bone marrow APL_16
GSM1031224
RRBS remission bone marrow APL_10325
GSM1031225
RRBS remission bone marrow APL_11436
GSM1031226
TrueSeq RRBS APL_patient APL_patient_48ATRA
GSM1031227
TrueSeq RRBS APL_patient APL_patient_48untreated
GSM1031228
TrueSeq RRBS APL_patient APL_patient_diagnosis
GSM1031229
RRBS Wildtype mice mm_14749_control_gr1
GSM1031230
RRBS Wildtype mice mm_14752_control_gr1
GSM1031231
RRBS Wildtype mice mm_14786_control_gr1
GSM1031232
RRBS PML-RARa Knock-in mice mm_31_PML-RAR_gr1
GSM1031233
RRBS PML-RARa Knock-in mice mm_33_PML-RAR_gr1
GSM1031234
RRBS PML-RARa Knock-in mice mm_34_PML-RAR_gr1
GSM1031235
RRBS lin- hematopoietic progenitor cells
GSM1031236
RRBS lin- PML_RAR transduced day 5
GSM1031237
RRBS lin- pMIGR transduced day 5
GSM1031238
RRBS lin- PML_RAR transduced day 10
GSM1031239
RRBS lin- pMIGR transduced 10
GSM1031240
ChiP-Seq SUZ12 APL blast
GSM1031241
ChiP-Seq REST APL blast
GSM1031242
ChiP-Seq IgG APL blast
GSM1032763
APL_10325_hm450
GSM1032764
APL_10545_hm450
GSM1032765
APL_11364_hm450
GSM1032766
APL_11428_hm450
GSM1032767
APL_11523_hm450
GSM1032768
APL_8452_hm450
GSM1032769
APL_8503_hm450
GSM1032770
APL_9882_hm450
GSM1032771
CD34_260511_hm450
GSM1032772
Promyelocyte_310511_hm450
This SuperSeries is composed of the following SubSeries:
GSE42044
DNA methylation changes are a late event in Acute Promyelocytic Leukemia and coincide with loss of transcription factor binding (sequencing)
GSE42118
DNA methylation changes are a late event in Acute Promyelocytic Leukemia and coincide with loss of transcription factor binding (Illumina Methylation)
Relations
BioProject
PRJNA179155
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TXT
Supplementary file
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GSE42119_RAW.tar
760.0 Mb
(http)
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TAR (of TXT)
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