|
| Status |
Public on Jan 19, 2017 |
| Title |
NGS and Transcriptome Analyses using AZ customized microarray on Flower Abscission zone in Tomato (Solanum lycopersicum) Plants |
| Organism |
Solanum lycopersicum |
| Experiment type |
Expression profiling by array
|
| Summary |
To extend our previous knowledge from our gene expression studies on Flower Abscission zone using Affymetrix microarray chip we have employed whole transcriptome analysis by NGS as a discovery platform to identify and add the transcripts to pre-existing database. We designed the Customized AZ Microarray chip with the transcripts obtained from NGS (includes novel transcripts), pre existing Agilent probes, and some additional transcripts from previous databases. The flower AZ tissue was sampled at five time points (0, 2, 4, 8, and 14 h), following flower removal and analyzed for their gene expression profiles using the customized AZ microarray.
|
| |
|
| Overall design |
Solanum lycopersicum Custom Microarray 4x180K Array designed by Genotypic Technology Private Limited. (AMADID:043310)
|
| |
|
| Contributor(s) |
Sundaresan S, Philosoph-Hadas S, Lers A, Meir S |
| Citation(s) |
26834766, 26697054 |
| |
| Submission date |
Mar 20, 2013 |
| Last update date |
Jul 30, 2019 |
| Contact name |
Srivignesh Sundaresan |
| E-mail(s) |
[email protected]
|
| Phone |
+972-3-9683367
|
| Organization name |
Agricultural Research Organisation, The volcani center, Israel
|
| Department |
Post Harvest Technology
|
| Lab |
Dr. Shimon Meir Lab
|
| Street address |
P.O.Box 6, Bet- Dagan
|
| City |
Bet-Dagan |
| State/province |
Israel |
| ZIP/Postal code |
50250 |
| Country |
Israel |
| |
|
| Platforms (1) |
| GPL16798 |
Solanum lycopersicum Custom 4x180K Array designed by Genotypic Technology Private Limited. (AMADID:043310) |
|
| Samples (16)
|
|
| Relations |
| BioProject |
PRJNA193527 |
Less...
More...