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| Status |
Public on Jan 03, 2014 |
| Title |
CHD chromatin remodelers regulate separate gene sets and distinct stages of Dictyostelium development |
| Organism |
Dictyostelium discoideum |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
We utilized RNA-seq to profile expression levels in wild type AX2 cells and three mutants for the CHD family of ATP-dependent chromatin remodellers in Dictyostelium discoideum. Total RNA was polyA enriched and sequenced at two stages of development: in the growth stage (0H) and in 5H cAMP pulsed cells (5H). All mutants analysed were also in the AX2 background.
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| Overall design |
Looking at mRNA levels in AX2, chdA-, chdB- and chdC-.
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| Contributor(s) |
Platt JL |
| Citation(s) |
24301467 |
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| Submission date |
May 23, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
James Platt |
| Organization name |
University of Oxford
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| Street address |
Roosevelt Drive
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| City |
Oxfors |
| ZIP/Postal code |
OX3 7BN |
| Country |
United Kingdom |
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| Platforms (1) |
| GPL15643 |
Illumina HiSeq 2000 (Dictyostelium discoideum) |
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| Samples (8)
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| Relations |
| BioProject |
PRJNA205159 |
| SRA |
SRP023109 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE47222_RAW.tar |
890.0 Kb |
(http)(custom) |
TAR (of TXT) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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