|
| Status |
Public on Jan 27, 2014 |
| Title |
Comparative genomic and transcriptomic analysis of Wangiella dermatitidis, a major cause of phaeohyphomycosis and a model black yeast human pathogen |
| Organism |
Exophiala dermatitidis |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We sequenced mRNA from Wangiella dermatitidis at two pH conditions (2.5 and 6), including three biological replicates of each sample.
|
| |
|
| Overall design |
Examination of transcript level changes in reponse to low pH stress.
|
| |
|
| Contributor(s) |
Cuomo CA, Chen Z, Wang Z |
| Citation(s) |
24496724 |
| |
| Submission date |
Oct 24, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
Christina A Cuomo |
| E-mail(s) |
[email protected]
|
| Organization name |
Broad Institute
|
| Street address |
7 Cambridge Center
|
| City |
Cambridge |
| State/province |
MA |
| ZIP/Postal code |
02142 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL17834 |
Illumina HiSeq 2000 (Exophiala dermatitidis) |
|
| Samples (6)
|
| GSM1250055 |
W. dermatitidis in pH6 minimal media replicate 1 |
| GSM1250056 |
W. dermatitidis in pH6 minimal media replicate 2 |
| GSM1250057 |
W. dermatitidis in pH6 minimal media replicate 3 |
| GSM1250058 |
W. dermatitidis in pH2.5 minimal media replicate 1 |
| GSM1250059 |
W. dermatitidis in pH2.5 minimal media replicate 2 |
| GSM1250060 |
W. dermatitidis in pH2.5 minimal media replicate 3 |
|
| Relations |
| SRA |
SRP006291 |
| BioProject |
PRJNA224192 |
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