|
| Status |
Public on Nov 09, 2013 |
| Title |
Gene expression analysis of Salmonella enterica serovar Typhimurium strain SL1344 swap |
| Platform organism |
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 |
| Sample organism |
Salmonella enterica subsp. enterica serovar Typhimurium |
| Experiment type |
Expression profiling by array
|
| Summary |
We performed transcriptome abundance analysis of Salmonella Typhimurium strain SL1344 swap which has been genetically engineered to express the hns open-reading frame from the stpA promoter and the stpA open reading frame from the hns promoter. This strain is designated SL1344(swap). Transcript abundance was compared with that of wild-type SL1344. This comparison was performed to determine the effect of chromosome location of the expression of two related global regulators and how alterations to their expression patterns would impact on their regulons.
|
| |
|
| Overall design |
Three independent RNA samples were harvested from wild-type SL1344 and SL1344(swap) grown to exponential phase (OD600nm = 0.3) and hybridized to a microarray containing multiple probes for each of the SL1344 open reading frames.
Please note that the original raw data file for the 'SL1344_wildtype_BR2' sample is unavailable, however, the 'wildtype SL1344 BR2.gpr' contains the raw data missing only the header information.
|
| |
|
| Contributor(s) |
Fitzgerald S, Dillon SC, Hokamp K, Dorman CJ |
| Citation(s) |
26631971 |
| |
| Submission date |
Nov 08, 2013 |
| Last update date |
Jul 26, 2019 |
| Contact name |
Shane Dillon |
| E-mail(s) |
[email protected]
|
| Organization name |
Moyne Institute of Preventive Medicine
|
| Department |
Department of Microbiology
|
| Street address |
Trinity College
|
| City |
Dublin |
| ZIP/Postal code |
Dublin 2 |
| Country |
Ireland |
| |
|
| Platforms (1) |
| GPL10008 |
Oxford Gene Technology Chip2 Salmonella typhimurium microarray SL1344 strain product code: 010021 |
|
| Samples (6)
|
|
| Relations |
| BioProject |
PRJNA227206 |
Less...
More...