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| Status |
Public on May 06, 2014 |
| Title |
Long RNA Seq on Sham vs MI Adult Mouse Heart |
| Organism |
Mus musculus |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
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| Summary |
We systematically identified, annotated and characterised the mouse long non-coding transcriptome during myocardial infarction, revealing hundreds of novel heart specific lncRNAs with unique functional and regulatory characteristics.
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| Overall design |
2 conditions, 4 biological replicates per condition
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| Contributor(s) |
Ounzain S, Micheletti R, Beckmann T, Schroen B, Alexanian M, Pezzuto I, Crippa S, Nemir M, Sarre A, Johnson R, Dauvillier J, Burdet F, Ibberson M, Guigo R, Xenarios I, Heymans S, Pedrazzini T |
| Citation(s) |
24786300 |
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| Submission date |
Nov 12, 2013 |
| Last update date |
Jan 29, 2021 |
| Contact name |
Frederic Burdet |
| E-mail(s) |
[email protected]
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| Organization name |
Swiss Institute of Bioinformatics
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| Street address |
Quartier Sorge - Batiment Amphipole
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| City |
Lausanne |
| ZIP/Postal code |
1015 |
| Country |
Switzerland |
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| Platforms (1) |
| GPL9250 |
Illumina Genome Analyzer II (Mus musculus) |
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| Samples (8)
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| GSM1262765 |
Heart, Sham, rep4 (reanalysis) |
| GSM1262766 |
Heart, MI, rep1 |
| GSM1262767 |
Heart, MI, rep2 |
| GSM1262768 |
Heart, MI, rep3 |
| GSM1262769 |
Heart, MI, rep4 |
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| Relations |
| BioProject |
PRJNA227375 |
| SRA |
SRP032952 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE52313_mouse_genes_counts_normalized.txt.gz |
1.3 Mb |
(ftp)(http) |
TXT |
| GSE52313_transcripts.gtf.gz |
7.3 Mb |
(ftp)(http) |
GTF |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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