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Series GSE53400 Query DataSets for GSE53400
Status Public on Apr 21, 2014
Title The effect of deficiency of BLT2 receptor on the gene expression in mouse skin during wound healing process
Organism Mus musculus
Experiment type Expression profiling by array
Summary Examination of gene expression in the skin of C57Black6 mice deficient in BLT2 receptor and control WT before and after skin punching.
 
Overall design Total RNA was prepared from punch biopsies (5 mm in diameter) by using the Qiagen RNeasy Fibrous Tissue Kit (Qiagen, Valencia, CA, USA). In case of punched skin, the samples were taken after 2 days of skin punching. RNA from three mice per group was mixed and used for labeling. Probe cDNA was amplified and labeled with an Illumina total prep RNA amplification kit (Illumina, San Diego, CA, USA) according to the manufacturer’s protocol and then used for hybridization with Illumina MouseWG-6 Expression BeadChip arrays. The signals were quantified by using the Illumina BeadStation with BeadArray technology, and the raw data were obtained by using Illumina BeadStudio software.
 
Contributor(s) Liu M, Saeki K, Yokomizo T
Citation(s) 24821912
Submission date Dec 17, 2013
Last update date Jan 16, 2019
Contact name Takehiko Yokomizo
E-mail(s) [email protected]
Phone 81-3-5802-1030
Organization name Juntendo University School of Medicine
Department Biochemistry
Street address Hongo 2-1-1, Bunkyo-ku
City Tokyo
ZIP/Postal code 113-8421
Country Japan
 
Platforms (1)
GPL6887 Illumina MouseWG-6 v2.0 expression beadchip
Samples (4)
GSM1290889 WT
GSM1290890 BLT2KO
GSM1290891 WT_punched
Relations
BioProject PRJNA231921

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE53400_RAW.tar 15.8 Mb (http)(custom) TAR
GSE53400_non_normalized.txt.gz 1.3 Mb (ftp)(http) TXT
Processed data included within Sample table

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