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Series GSE54941 Query DataSets for GSE54941
Status Public on Jun 01, 2015
Title Genomic mapping of E2F3 and E2F4 binding sites in neurospheres
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by genome tiling array
Summary Neural precursor cells from the ganglionic eminence at E14.5 were isolated and cultured as neurospheres. E2F3 and E2F4 genomic binding sites are mapped by ChIP-on-Chip on wild type or mutant cells.
 
Overall design All cells used in this study were cultured as neurospheres. Neural precursors were obtained by dissection of the ganglionic eminence from developing embryos at gestational age E14.5 from either wild type mice or germline E2f3a and E2f3b deficient mice, and cells were cultured as neurospheres. 3 independent biological replicates were used for each experiment. The customized microarray design counts approximately 1 million probes covering the proximal promoter of most mouse genes.
 
Contributor(s) Julian L, Blais A, Slack R, Liu Y
Citation(s) 25909886
Submission date Feb 12, 2014
Last update date May 10, 2023
Contact name Alexandre Blais
E-mail(s) [email protected]
Organization name University of Ottawa
Street address 451 Smyth Road
City Ottawa
State/province ON
ZIP/Postal code K1H 8M5
Country Canada
 
Platforms (1)
GPL18280 Agilent-022821 Slack_Design02
Samples (12)
GSM1326858 E2f4_wt_replicate1
GSM1326859 E2f4_wt_replicate2
GSM1326860 E2f4_wt_replicate3
Relations
BioProject PRJNA238072

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE54941_RAW.tar 1.3 Gb (http)(custom) TAR (of TXT)
Processed data provided as supplementary file

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