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Series GSE56510 Query DataSets for GSE56510
Status Public on May 04, 2014
Title Rapid evolution of phenotypic plasticity and shifting thresholds of genetic assimilation in the nematode Caenorhabditis remanei
Organism Caenorhabditis remanei
Experiment type Expression profiling by high throughput sequencing
Summary Many organisms can acclimate to new environments through phenotypic plasticity, a complex trait that can be heritable, subject to selection, and evolve. However, the rate and genetic basis of plasticity evolution remain largely unknown. We experimentally evolved outbred populations of the nematode Caenorhabditis remanei under an acute heat shock during early larval development. When raised in a non-stressful environment, ancestral populations were highly sensitive to a 36.8°C heat shock and exhibited high mortality. However, initial exposure to a non-lethal high temperature environment resulted in significantly reduced mortality during heat shock (hormesis). Lines selected for heat shock resistance rapidly evolved the capacity to withstand heat shock in the native environment without any initial exposure to high temperatures, and early exposure to high temperatures did not lead to further increases in heat resistance. This loss of plasticity would appear to have resulted from the genetic assimilation of the heat induction response in the non-inducing environment. However, analyses of transcriptional variation via RNA-sequencing from the selected populations revealed no global changes in gene regulation correlated with the observed changes in heat stress resistance. Instead, assays of the phenotypic response across a broader range of temperatures revealed that the induced plasticity was not fixed across environments, but rather the threshold for the response was shifted to higher temperatures over evolutionary time. These results demonstrate that apparent genetic assimilation can result from shifting thresholds of induction across environments and that analysis of the broader environmental context is critically important for understanding the evolution of phenotypic plasticity.
 
Overall design mRNA profiles of ancestral and two experimentally evolved populations of C. remanei at 20°C or 30°C, 6 replicates/temperature for each population
 
Contributor(s) Sikkink KL, Reynolds RM, Ituarte CM, Cresko WA, Phillips PC
Citation(s) 24727288
Submission date Apr 04, 2014
Last update date May 15, 2019
Contact name Patrick C. Phillips
E-mail(s) [email protected]
Organization name University of Oregon
Department Institute of Ecology and Evolution
Street address 5289 University of Oregon
City Eugene
State/province OR
ZIP/Postal code 97403
Country USA
 
Platforms (1)
GPL16141 Illumina HiSeq 2000 (Caenorhabditis remanei)
Samples (36)
GSM1362987 ancestor20-1
GSM1362988 ancestor20-2
GSM1362989 ancestor20-3
Relations
BioProject PRJNA243567
SRA SRP040962

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE56510_RAW.tar 3.7 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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