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Series GSE58390 Query DataSets for GSE58390
Status Public on Jun 12, 2014
Title Pseudomonas aeruginosa Ceftolozane-Tazobactam Resistance Development Requires Multiple Mutations Leading to Overexpression and Structural Modification of AmpC.
Organism Pseudomonas aeruginosa PAO1
Experiment type Expression profiling by high throughput sequencing
Summary We compared the dynamics and mechanisms of resistance development to ceftazidime, meropenem, ciprofloxacin, and ceftolozane-tazobactam in wild-type (PAO1) and mutator (PAOMS, ∆mutS) P. aeruginosa. The strains were incubated for 24 h with 0.5 to 64× MICs of each antibiotic in triplicate experiments. The tubes from the highest antibiotic concentration showing growth were reinoculated in fresh medium containing concentrations up to 64× MIC for 7 consecutive days. The susceptibility profiles and resistance mechanisms were assessed in two isolated colonies from each step, antibiotic, and strain. Ceftolozane-tazobactam-resistant mutants were further characterized by whole-genome analysis through RNA sequencing (RNA-seq). The development of high-level resistance was fastest for ceftazidime, followed by meropenem and ciprofloxacin. None of the mutants selected with these antibiotics showed cross-resistance to ceftolozane-tazobactam. On the other hand, ceftolozane-tazobactam resistance development was much slower, and high-level resistance was observed for the mutator strain only. PAO1 derivatives that were moderately resistant (MICs, 4 to 8 ug/ml) to ceftolozane-tazobactam showed only 2 to 4 mutations, which determined global pleiotropic effects associated with a severe fitness cost. High-level-resistant (MICs, 32 to 128 ug/ml) PAOMS derivatives showed 45 to 53 mutations. Major changes in the global gene expression profiles were detected in all mutants, but only PAOMS mutants showed ampC overexpression, which was caused by dacB or ampR mutations. Moreover, all PAOMS mutants contained 1 to 4 mutations in the conserved residues of AmpC (F147L, Q157R, G183D, E247K, or V356I). Complementation studies revealed that these mutations greatly increased ceftolozane-tazobactam and ceftazidime MICs but reduced those of piperacillin-tazobactam and imipenem, compared to those in wild-type ampC. Therefore, the development of high-level resistance to ceftolozane-tazobactam appears to occur efficiently only in a P. aeruginosa mutator background, in which multiple mutations lead to overexpression and structural modifications of AmpC.
 
Overall design Mutants of Pseudomonas aeroginosa PAO1 and PAO1 ∆mutS against Ceftolozane-tazobactam were generated and analysed using RNA-Seq
 
Contributor(s) Cabot G, Bruchmann S, Mulet X, Zamorano L, Moyà B, Juan C, Haussler S, Oliver A
Citation(s) 24637685
Submission date Jun 11, 2014
Last update date May 15, 2019
Contact name Denitsa Eckweiler
E-mail(s) [email protected]
Organization name Technische Universität Braunschweig
Department Institute of Microbiology
Lab Prof. Dieter Jahn
Street address Spielmannstr. 7
City Braunschweig
State/province Lower Saxony
ZIP/Postal code D-38106
Country Germany
 
Platforms (1)
GPL18782 Illumina HiSeq 2500 (Pseudomonas aeruginosa PAO1)
Samples (16)
GSM1409762 PAO1_1
GSM1409763 PAO1.1_1
GSM1409764 PAO1.2_1
Relations
BioProject PRJNA252560
SRA SRP043146

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Supplementary file Size Download File type/resource
GSE58390_RAW.tar 1.6 Mb (http)(custom) TAR (of TXT, VCF)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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