|
| Status |
Public on Aug 24, 2014 |
| Title |
PSI-seq to Identify Sites of Pseudouridylation in S. cerevisiae |
| Organism |
Saccharomyces cerevisiae |
| Experiment type |
Other
|
| Summary |
Using a technique based on the ability of CMC to specifically label pseudouridines and to stop reverse transcriptase, we provide a transcriptome-wide map of pseudouridylation in S. cerevisiae under log phase and heat shock conditions
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| |
|
| Overall design |
4 conditions: log phase (2x), heat shock, and stationary phase. For each condition, there are 4 libraries: natural RNA + or - CMC treatment and in vitro transcribed RNA + or - CMC treatment
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| |
|
| Contributor(s) |
Lovejoy AF, Riordan DP, Brown PO |
| Citation(s) |
25353621 |
| |
| Submission date |
Aug 15, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Alexander F Lovejoy |
| Organization name |
Stanford University
|
| Department |
Biochemistry
|
| Lab |
Brown
|
| Street address |
279 Campus Drive
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94306 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL9377 |
Illumina Genome Analyzer II (Saccharomyces cerevisiae) |
|
| Samples (16)
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|
| Relations |
| BioProject |
PRJNA258278 |
| SRA |
SRP045530 |
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