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Series GSE63741 Query DataSets for GSE63741
Status Public on Dec 02, 2014
Title Gene Expression Analyses of Homo sapiens Inflammatory Skin Diseases
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Transcriptional profiling of Homo sapiens inflammatory skin diseases (whole skin biospies): Psoriasis (Pso), vs Atopic Dermatitis (AD) vs Lichen planus (Li), vs Contact Eczema (KE), vs Healthy control (KO)
In recent years, different genes and proteins have been highlighted as potential biomarkers for psoriasis, one of the most common inflammatory skin diseases worldwide. However, most of these markers are not psoriasis-specific but also found in other inflammatory disorders. We performed an unsupervised cluster analysis of gene expression profiles in 150 psoriasis patients and other inflammatory skin diseases (atopic dermatitis, lichen planus, contact eczema, and healthy controls). We identified a cluster of IL-17/TNFα-associated genes specifically expressed in psoriasis, among which IL-36γ was the most outstanding marker. In subsequent immunohistological analyses IL-36γ was confirmed to be expressed in psoriasis lesions only. IL-36γ peripheral blood serum levels were found to be closely associated with disease activity, and they decreased after anti-TNFα-treatment. Furthermore, IL-36γ immunohistochemistry was found to be a helpful marker in the histological differential diagnosis between psoriasis and eczema in diagnostically challenging cases. These features highlight IL-36γ as a valuable biomarker in psoriasis patients, both for diagnostic purposes and measurement of disease activity during the clinical course. Furthermore, IL-36γ might also provide a future drug target, due to its potential amplifier role in TNFα- and IL-17 pathways in psoriatic skin inflammation. In recent years, different genes and proteins have been highlighted as potential biomarkers for psoriasis, one of the most common inflammatory skin diseases worldwide. However, most of these markers are not psoriasis-specific but also found in other inflammatory disorders. We performed an unsupervised cluster analysis of gene expression profiles in 150 psoriasis patients and other inflammatory skin diseases (atopic dermatitis, lichen planus, contact eczema, and healthy controls). We identified a cluster of IL-17/TNFα-associated genes specifically expressed in psoriasis, among which IL-36γ was the most outstanding marker. In subsequent immunohistological analyses IL-36γ was confirmed to be expressed in psoriasis lesions only. IL-36γ peripheral blood serum levels were found to be closely associated with disease activity, and they decreased after anti-TNFα-treatment. Furthermore, IL-36γ immunohistochemistry was found to be a helpful marker in the histological differential diagnosis between psoriasis and eczema in diagnostically challenging cases. These features highlight IL-36γ as a valuable biomarker in psoriasis patients, both for diagnostic purposes and measurement of disease activity during the clinical course. Furthermore, IL-36γ might also provide a future drug target, due to its potential amplifier role in TNFα- and IL-17 pathways in psoriatic skin inflammation.
 
Overall design Ex vivo analyses: gene expression analyses (total RNA) of lesional skin versus common skin reference (two channel)
 
Contributor(s) Wenzel J
Citation(s) 25525775
Submission date Dec 01, 2014
Last update date Jan 05, 2015
Contact name Joerg Wenzel
E-mail(s) [email protected]
Organization name University of Bonn
Department Dermatology
Street address Sigmund Freud Str 25
City Bonn
ZIP/Postal code 53121
Country Germany
 
Platforms (1)
GPL19471 PIQOR (TM) Skin 2.0 Microarray, human, antisense (591)
Samples (150)
GSM1556392 0004040070|KO Control
GSM1556393 0003670053|KO Control
GSM1556394 0003670013|KO Control
Relations
BioProject PRJNA268959

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE63741_RAW.tar 330.3 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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